Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10525
         (737 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23529-9|AAL32210.1|  713|Caenorhabditis elegans G-protein-linke...    33   0.28 
U23529-8|AAL32209.1|  682|Caenorhabditis elegans G-protein-linke...    33   0.28 
U23529-7|AAL32211.1|  622|Caenorhabditis elegans G-protein-linke...    33   0.28 
AF117301-1|AAF26202.1|  622|Caenorhabditis elegans G protein-lin...    33   0.28 
AF117300-1|AAF26201.1|  713|Caenorhabditis elegans G protein-lin...    33   0.28 
AF075245-1|AAD13747.1|  682|Caenorhabditis elegans G protein-lin...    33   0.28 
AL117199-4|CAN99722.1| 1342|Caenorhabditis elegans Hypothetical ...    28   7.9  
AL117195-32|CAB60770.3| 1342|Caenorhabditis elegans Hypothetical...    28   7.9  

>U23529-9|AAL32210.1|  713|Caenorhabditis elegans G-protein-linked
           acetylcholinereceptor protein 1, isoform b protein.
          Length = 713

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 20/67 (29%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
 Frame = +3

Query: 21  IVRTEKTHVNNDRLQYAIYLSRNIEVNEIPSRYVVCSS-ADSVINIKVFYYICMYVQHID 197
           IV + +T + N  +  A  + RNI   ++ +RY+V  + +D +I I+ F +  +YV + D
Sbjct: 32  IVLSLETIIGNAMVVMAYRIERNIS-KQVSNRYIVSLAISDLIIGIEGFPFFTVYVLNGD 90

Query: 198 RGRVLWL 218
           R  + W+
Sbjct: 91  RWPLGWV 97


>U23529-8|AAL32209.1|  682|Caenorhabditis elegans G-protein-linked
           acetylcholinereceptor protein 1, isoform a protein.
          Length = 682

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 20/67 (29%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
 Frame = +3

Query: 21  IVRTEKTHVNNDRLQYAIYLSRNIEVNEIPSRYVVCSS-ADSVINIKVFYYICMYVQHID 197
           IV + +T + N  +  A  + RNI   ++ +RY+V  + +D +I I+ F +  +YV + D
Sbjct: 32  IVLSLETIIGNAMVVMAYRIERNIS-KQVSNRYIVSLAISDLIIGIEGFPFFTVYVLNGD 90

Query: 198 RGRVLWL 218
           R  + W+
Sbjct: 91  RWPLGWV 97


>U23529-7|AAL32211.1|  622|Caenorhabditis elegans G-protein-linked
           acetylcholinereceptor protein 1, isoform c protein.
          Length = 622

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 20/67 (29%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
 Frame = +3

Query: 21  IVRTEKTHVNNDRLQYAIYLSRNIEVNEIPSRYVVCSS-ADSVINIKVFYYICMYVQHID 197
           IV + +T + N  +  A  + RNI   ++ +RY+V  + +D +I I+ F +  +YV + D
Sbjct: 32  IVLSLETIIGNAMVVMAYRIERNIS-KQVSNRYIVSLAISDLIIGIEGFPFFTVYVLNGD 90

Query: 198 RGRVLWL 218
           R  + W+
Sbjct: 91  RWPLGWV 97


>AF117301-1|AAF26202.1|  622|Caenorhabditis elegans G protein-linked
           acetylcholinereceptor GAR-1c protein.
          Length = 622

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 20/67 (29%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
 Frame = +3

Query: 21  IVRTEKTHVNNDRLQYAIYLSRNIEVNEIPSRYVVCSS-ADSVINIKVFYYICMYVQHID 197
           IV + +T + N  +  A  + RNI   ++ +RY+V  + +D +I I+ F +  +YV + D
Sbjct: 32  IVLSLETIIGNAMVVMAYRIERNIS-KQVSNRYIVSLAISDLIIGIEGFPFFTVYVLNGD 90

Query: 198 RGRVLWL 218
           R  + W+
Sbjct: 91  RWPLGWV 97


>AF117300-1|AAF26201.1|  713|Caenorhabditis elegans G protein-linked
           acetylcholinereceptor GAR-1a protein.
          Length = 713

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 20/67 (29%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
 Frame = +3

Query: 21  IVRTEKTHVNNDRLQYAIYLSRNIEVNEIPSRYVVCSS-ADSVINIKVFYYICMYVQHID 197
           IV + +T + N  +  A  + RNI   ++ +RY+V  + +D +I I+ F +  +YV + D
Sbjct: 32  IVLSLETIIGNAMVVMAYRIERNIS-KQVSNRYIVSLAISDLIIGIEGFPFFTVYVLNGD 90

Query: 198 RGRVLWL 218
           R  + W+
Sbjct: 91  RWPLGWV 97


>AF075245-1|AAD13747.1|  682|Caenorhabditis elegans G protein-linked
           acetylcholinereceptor GAR-1b protein.
          Length = 682

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 20/67 (29%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
 Frame = +3

Query: 21  IVRTEKTHVNNDRLQYAIYLSRNIEVNEIPSRYVVCSS-ADSVINIKVFYYICMYVQHID 197
           IV + +T + N  +  A  + RNI   ++ +RY+V  + +D +I I+ F +  +YV + D
Sbjct: 32  IVLSLETIIGNAMVVMAYRIERNIS-KQVSNRYIVSLAISDLIIGIEGFPFFTVYVLNGD 90

Query: 198 RGRVLWL 218
           R  + W+
Sbjct: 91  RWPLGWV 97


>AL117199-4|CAN99722.1| 1342|Caenorhabditis elegans Hypothetical
           protein Y57A10A.1 protein.
          Length = 1342

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 18/77 (23%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
 Frame = -3

Query: 228 NVALTKEPFPCLYVVHTYIYNKILLYLSHCLHYYILHSVKVFHSPQYFLKDKSHIGDDHC 49
           N+ L K+P      +H  +Y   ++       + +   VKVF +    L  + H+  DH 
Sbjct: 102 NIVLNKDPLINAQTLHDLLYMTSVVVYEPVFKWLVDAGVKVFLNTDRKLLLEEHMNTDHS 161

Query: 48  -LHVFFRYARFWVPAID 1
            +H + R  R +   +D
Sbjct: 162 HVHCWSRKRRDYFIYLD 178


>AL117195-32|CAB60770.3| 1342|Caenorhabditis elegans Hypothetical
           protein Y57A10A.1 protein.
          Length = 1342

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 18/77 (23%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
 Frame = -3

Query: 228 NVALTKEPFPCLYVVHTYIYNKILLYLSHCLHYYILHSVKVFHSPQYFLKDKSHIGDDHC 49
           N+ L K+P      +H  +Y   ++       + +   VKVF +    L  + H+  DH 
Sbjct: 102 NIVLNKDPLINAQTLHDLLYMTSVVVYEPVFKWLVDAGVKVFLNTDRKLLLEEHMNTDHS 161

Query: 48  -LHVFFRYARFWVPAID 1
            +H + R  R +   +D
Sbjct: 162 HVHCWSRKRRDYFIYLD 178


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,856,424
Number of Sequences: 27780
Number of extensions: 329520
Number of successful extensions: 651
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 651
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1735436670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)