Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10523
         (773 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q7L5N1 Cluster: COP9 signalosome complex subunit 6; n=3...    72   2e-11
UniRef50_Q8W206 Cluster: COP9 signalosome complex subunit 6a; n=...    39   0.16 
UniRef50_Q2MJW1 Cluster: COP9 signalosome subunit 6; n=1; Chlamy...    37   0.64 
UniRef50_UPI000023EB30 Cluster: predicted protein; n=1; Gibberel...    35   2.6  
UniRef50_Q8IBH6 Cluster: Putative uncharacterized protein PF07_0...    34   4.5  
UniRef50_Q2PQ73 Cluster: COP9 signalosome complex subunit 6; n=2...    34   4.5  
UniRef50_Q6GCS5 Cluster: Putative membrane protein; n=7; Staphyl...    33   7.9  
UniRef50_Q017P6 Cluster: COP9 signalosome, subunit CSN6; n=1; Os...    33   7.9  

>UniRef50_Q7L5N1 Cluster: COP9 signalosome complex subunit 6; n=39;
           Eumetazoa|Rep: COP9 signalosome complex subunit 6 - Homo
           sapiens (Human)
          Length = 327

 Score = 71.7 bits (168), Expect = 2e-11
 Identities = 29/44 (65%), Positives = 36/44 (81%)
 Frame = +2

Query: 53  TSQQFRTHFYNQCNDVALMTYLGTITKGCNAINQLVNRFKVLYD 184
           ++ +F+T FY+QCNDV LM YLGTITK CN +NQ VN+F VLYD
Sbjct: 271 STDKFKTDFYDQCNDVGLMAYLGTITKTCNTMNQFVNKFNVLYD 314


>UniRef50_Q8W206 Cluster: COP9 signalosome complex subunit 6a; n=11;
           Magnoliophyta|Rep: COP9 signalosome complex subunit 6a -
           Arabidopsis thaliana (Mouse-ear cress)
          Length = 317

 Score = 38.7 bits (86), Expect = 0.16
 Identities = 16/43 (37%), Positives = 28/43 (65%)
 Frame = +2

Query: 56  SQQFRTHFYNQCNDVALMTYLGTITKGCNAINQLVNRFKVLYD 184
           S++F+ +F  + ND  L+TYL  IT   + +N++V++F   YD
Sbjct: 263 SERFQDNFLMEYNDKLLITYLAMITNCSSNMNEMVDKFNTAYD 305


>UniRef50_Q2MJW1 Cluster: COP9 signalosome subunit 6; n=1;
           Chlamydomonas reinhardtii|Rep: COP9 signalosome subunit
           6 - Chlamydomonas reinhardtii
          Length = 314

 Score = 36.7 bits (81), Expect = 0.64
 Identities = 14/40 (35%), Positives = 25/40 (62%)
 Frame = +2

Query: 65  FRTHFYNQCNDVALMTYLGTITKGCNAINQLVNRFKVLYD 184
           F   +  + ND  L  YL ++T+G +A N++V++F + YD
Sbjct: 267 FNREYLTEYNDTLLTLYLASMTRGTHAANEVVDKFCLAYD 306


>UniRef50_UPI000023EB30 Cluster: predicted protein; n=1; Gibberella
           zeae PH-1|Rep: predicted protein - Gibberella zeae PH-1
          Length = 287

 Score = 34.7 bits (76), Expect = 2.6
 Identities = 25/67 (37%), Positives = 35/67 (52%)
 Frame = +3

Query: 483 MKYHSLVSF*RVKMAS*TPSRIDFLNFFFKLTCMNEICLL*NHNSSLKYFFPLILYQVIN 662
           M++HSL++F         PS    L+FFF     + +    NH+SS   FFPL +   +N
Sbjct: 183 MQHHSLLNF--FFFFGDKPSLKQLLSFFFSSATSHRL----NHSSSS--FFPLAINHHLN 234

Query: 663 NLFFF*F 683
            LFFF F
Sbjct: 235 YLFFFFF 241


>UniRef50_Q8IBH6 Cluster: Putative uncharacterized protein PF07_0118;
            n=3; Plasmodium|Rep: Putative uncharacterized protein
            PF07_0118 - Plasmodium falciparum (isolate 3D7)
          Length = 5561

 Score = 33.9 bits (74), Expect = 4.5
 Identities = 24/71 (33%), Positives = 37/71 (52%)
 Frame = -3

Query: 630  NISN*NYDFITNIFRSYM*V*KKNSKSLFLKEFMMPF*LFRSLLDCDISF*KI*ANLFGN 451
            NI N NY +  N+F SY+ + +KNS SL+ K       LF +     I+F  +  N    
Sbjct: 1659 NIYNNNYYYDNNLFLSYLHLYEKNSISLYKKNLK----LFDNFNLTHINFINVLFNFIFY 1714

Query: 450  QSVFHIILYPY 418
            ++++ I LY Y
Sbjct: 1715 ENIYLINLYLY 1725


>UniRef50_Q2PQ73 Cluster: COP9 signalosome complex subunit 6; n=2;
           Dictyostelium discoideum|Rep: COP9 signalosome complex
           subunit 6 - Dictyostelium discoideum (Slime mold)
          Length = 309

 Score = 33.9 bits (74), Expect = 4.5
 Identities = 13/40 (32%), Positives = 25/40 (62%)
 Frame = +2

Query: 56  SQQFRTHFYNQCNDVALMTYLGTITKGCNAINQLVNRFKV 175
           +  F+  +  + NDV L+TYL +ITK   ++N  ++++ V
Sbjct: 258 THDFKKSYLQEYNDVLLVTYLASITKTSASLNDTIDKYLV 297


>UniRef50_Q6GCS5 Cluster: Putative membrane protein; n=7;
           Staphylococcus aureus|Rep: Putative membrane protein -
           Staphylococcus aureus (strain MSSA476)
          Length = 572

 Score = 33.1 bits (72), Expect = 7.9
 Identities = 27/78 (34%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
 Frame = -2

Query: 448 VSLPHNSIPIFRRFHFCELFYFYTNSYV-QFIIITVHKQNIHNICSYKTNCTIYFADGTR 272
           +SL H S  IF    FC L YF T SYV Q I I +   +   + SY   C   F  G+ 
Sbjct: 147 ISLYHISPFIFNLKVFCALIYFSTISYVIQIIFINIKVISTKKLFSYH-YCVFNFMMGSI 205

Query: 271 Y*RHSF-ISFMILTSALK 221
                F +SF+++   +K
Sbjct: 206 VSVIGFVVSFLLVNLLIK 223


>UniRef50_Q017P6 Cluster: COP9 signalosome, subunit CSN6; n=1;
           Ostreococcus tauri|Rep: COP9 signalosome, subunit CSN6 -
           Ostreococcus tauri
          Length = 236

 Score = 33.1 bits (72), Expect = 7.9
 Identities = 13/39 (33%), Positives = 25/39 (64%)
 Frame = +2

Query: 53  TSQQFRTHFYNQCNDVALMTYLGTITKGCNAINQLVNRF 169
           +S   R  F ++  DV L+ YL ++TK  + +N+LV+++
Sbjct: 157 SSDSVRDTFVDEYEDVLLVNYLASLTKAVDNLNELVDKY 195


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 659,718,972
Number of Sequences: 1657284
Number of extensions: 12039317
Number of successful extensions: 27319
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 26295
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27315
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 65027411410
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)