Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10523
         (773 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|ch...    28   1.3  
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      27   2.3  
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo...    26   5.2  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    25   9.1  
SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2 |...    25   9.1  

>SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 743

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 17/65 (26%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
 Frame = -2

Query: 394 LFYFYTNSYVQFIIITVHKQNIHNICSYKTNCTIYFADG-TRY*RHSFISFMILTSALKE 218
           +++ +T+S +  I I++ K+ + +ICS   NC I   +    +  H F+   ++  AL+ 
Sbjct: 526 MYHAFTSSII--IFISILKRPLASICSEDLNCLISVKNRLISFETHGFVRLNVVMDALES 583

Query: 217 ESSHA 203
             S A
Sbjct: 584 MISTA 588


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = -2

Query: 403 FCELFYFYTNSYVQFIIITVHKQNIHNICSYK 308
           FC  FYF   S+  F+  ++H      +C +K
Sbjct: 108 FCFFFYFSLFSFFSFLFTSLHFNFFFRLCRHK 139


>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2244

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
 Frame = -2

Query: 433  NSIPIFRRFHFCELFYFYTNSYVQFII-----ITVHKQNIHNICSYKTNCTIYFADGTR 272
            NS P +R+          ++ +V F I     I V +Q + ++C  K  CT++F   TR
Sbjct: 1930 NSSPFYRKHIISVHQVTRSDLHVLFAIAHQMRIIVERQGVIDLCYGKLLCTMFFEPSTR 1988


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 9/27 (33%), Positives = 19/27 (70%)
 Frame = -2

Query: 229  ALKEESSHAPSHALSVVEHFESIHKLI 149
            +L  E+ +  S+ALS ++H+ + HK++
Sbjct: 1111 SLCSENENTRSNALSCIDHYLNAHKML 1137


>SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 760

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +2

Query: 428 RIMWKTDWLPNKLAYIF 478
           RI+W   W P ++ Y F
Sbjct: 625 RIIWDASWAPKEMGYFF 641


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,909,937
Number of Sequences: 5004
Number of extensions: 56746
Number of successful extensions: 126
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)