Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10523
         (773 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1145 - 24674319-24674403,24674691-24674746,24674885-246749...    32   0.44 
03_05_0739 + 27271404-27271988,27272265-27272411                       30   2.3  

>08_02_1145 -
           24674319-24674403,24674691-24674746,24674885-24674965,
           24675063-24675137,24675418-24675479,24675857-24675950,
           24676674-24676762,24676864-24677194
          Length = 290

 Score = 32.3 bits (70), Expect = 0.44
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +2

Query: 92  NDVALMTYLGTITKGCNAINQLVNRFKVLYD 184
           ND  LMTYL   T   + +N+LV +F   Y+
Sbjct: 247 NDTLLMTYLAMFTNCSSTMNELVEKFNATYE 277


>03_05_0739 + 27271404-27271988,27272265-27272411
          Length = 243

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 18/61 (29%), Positives = 28/61 (45%)
 Frame = -2

Query: 370 YVQFIIITVHKQNIHNICSYKTNCTIYFADGTRY*RHSFISFMILTSALKEESSHAPSHA 191
           Y +F+ +T+H Q + N    +T    +  DG+ Y     I    L  AL ++S HA    
Sbjct: 129 YGEFVAVTIHLQRLSNDNHLRTAFLFFDKDGSGY-----IDRAELADALADDSGHADDAV 183

Query: 190 L 188
           L
Sbjct: 184 L 184


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,774,098
Number of Sequences: 37544
Number of extensions: 291707
Number of successful extensions: 605
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 605
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)