Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10523
         (773 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38386| Best HMM Match : PALP (HMM E-Value=4.1e-10)                  29   5.5  
SB_28739| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.3  

>SB_38386| Best HMM Match : PALP (HMM E-Value=4.1e-10)
          Length = 736

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = +2

Query: 242 HKRNERMTLITGTVC-KIYCTIGFVTANIVNILLVDRNNYELHV 370
           H+RN R     G +  K YC   F   NI N+  +D N + L +
Sbjct: 371 HRRNARKRRTRGEIISKAYCESKFPNKNICNLTRLDNNLHILEL 414


>SB_28739| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 270

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -2

Query: 388 YFYTNSYVQFIIITVHKQNIHNICSYKTNCTIYFAD-GTR 272
           Y YTN+  +   ITVH+   H+  + + NCTI   + GTR
Sbjct: 109 YMYTNTVHELGTITVHE---HSTITIRQNCTITVHEHGTR 145


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,596,443
Number of Sequences: 59808
Number of extensions: 377540
Number of successful extensions: 739
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 739
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2107953584
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)