Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10523
         (773 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70735-1|AAD03469.1|  297|Homo sapiens 34 kDa Mov34 homolog prot...    72   3e-12
BC002520-1|AAH02520.2|  327|Homo sapiens COP9 constitutive photo...    72   3e-12

>U70735-1|AAD03469.1|  297|Homo sapiens 34 kDa Mov34 homolog
           protein.
          Length = 297

 Score = 71.7 bits (168), Expect = 3e-12
 Identities = 29/44 (65%), Positives = 36/44 (81%)
 Frame = +2

Query: 53  TSQQFRTHFYNQCNDVALMTYLGTITKGCNAINQLVNRFKVLYD 184
           ++ +F+T FY+QCNDV LM YLGTITK CN +NQ VN+F VLYD
Sbjct: 241 STDKFKTDFYDQCNDVGLMAYLGTITKTCNTMNQFVNKFNVLYD 284


>BC002520-1|AAH02520.2|  327|Homo sapiens COP9 constitutive
           photomorphogenic homolog subunit 6 (Arabidopsis)
           protein.
          Length = 327

 Score = 71.7 bits (168), Expect = 3e-12
 Identities = 29/44 (65%), Positives = 36/44 (81%)
 Frame = +2

Query: 53  TSQQFRTHFYNQCNDVALMTYLGTITKGCNAINQLVNRFKVLYD 184
           ++ +F+T FY+QCNDV LM YLGTITK CN +NQ VN+F VLYD
Sbjct: 271 STDKFKTDFYDQCNDVGLMAYLGTITKTCNTMNQFVNKFNVLYD 314


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,752,143
Number of Sequences: 237096
Number of extensions: 1716145
Number of successful extensions: 4126
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4082
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4126
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9367263024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)