Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10523
         (773 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g56280.1 68418.m07024 COP9 signalosome subunit 6 / CSN subuni...    39   0.004
At4g26430.1 68417.m03803 COP9 signalosome subunit 6 / CSN subuni...    38   0.007

>At5g56280.1 68418.m07024 COP9 signalosome subunit 6 / CSN subunit 6
           (CSN6A) identical to CSN complex subunit 6A [Arabidopsis
           thaliana] GI:18056665, COP9 complex subunit 6
           [Arabidopsis thaliana] GI:15809663; contains Pfam
           profile PF01398: Mov34/MPN/PAD-1 family; identical to
           cDNA CSN complex subunit 6A (CSN6A) GI:18056664
          Length = 317

 Score = 38.7 bits (86), Expect = 0.004
 Identities = 16/43 (37%), Positives = 28/43 (65%)
 Frame = +2

Query: 56  SQQFRTHFYNQCNDVALMTYLGTITKGCNAINQLVNRFKVLYD 184
           S++F+ +F  + ND  L+TYL  IT   + +N++V++F   YD
Sbjct: 263 SERFQDNFLMEYNDKLLITYLAMITNCSSNMNEMVDKFNTAYD 305


>At4g26430.1 68417.m03803 COP9 signalosome subunit 6 / CSN subunit 6
           (CSN6B) identical to COP9 signalosome subunit 6
           [Arabidopsis thaliana] GI:17940314, CSN complex subunit
           6B [Arabidopsis thaliana] GI:18056667; contains Pfam
           profile PF01398: Mov34/MPN/PAD-1 family; supporting cDNA
           gi|17940313|gb|AF434762.1|AF434762; identical to cDNA
           CSN complex subunit 6B (CSN6B) GI:18056666
          Length = 317

 Score = 37.9 bits (84), Expect = 0.007
 Identities = 16/43 (37%), Positives = 27/43 (62%)
 Frame = +2

Query: 56  SQQFRTHFYNQCNDVALMTYLGTITKGCNAINQLVNRFKVLYD 184
           S++F  +F  + ND  LM+YL  IT   + +N++V++F   YD
Sbjct: 263 SEKFNENFLMEYNDKLLMSYLAMITNCTSNMNEVVDKFNTAYD 305


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,401,914
Number of Sequences: 28952
Number of extensions: 262896
Number of successful extensions: 586
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 586
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1726528800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)