Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10522
(645 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q5MGK5 Cluster: Ribosomal protein 23; n=2; Endopterygot... 137 2e-31
UniRef50_P09180 Cluster: 60S ribosomal protein L4; n=96; Eukaryo... 120 4e-26
UniRef50_P36578 Cluster: 60S ribosomal protein L4; n=70; Eukaryo... 100 6e-20
UniRef50_Q00UB0 Cluster: Ribosomal protein RPL1/RPL2/RL4L4; n=1;... 91 2e-17
UniRef50_Q0U8Q3 Cluster: Putative uncharacterized protein; n=1; ... 89 1e-16
UniRef50_Q3SEA6 Cluster: Ribosomal protein L4, putative; n=2; Ol... 83 7e-15
UniRef50_Q95YH2 Cluster: Ribosomal protein L4; n=1; Paramecium c... 82 1e-14
UniRef50_Q1KYM6 Cluster: RPL4; n=1; Streblomastix strix|Rep: RPL... 79 7e-14
UniRef50_Q4XUM2 Cluster: 60S ribosomal subunit protein L4/L1, pu... 76 6e-13
UniRef50_A7E7X3 Cluster: 60S ribosomal protein L4; n=2; Scleroti... 76 6e-13
UniRef50_UPI0000499FAF Cluster: 60S ribosomal protein L4; n=5; E... 72 1e-11
UniRef50_A2E1Z6 Cluster: Ribosomal protein, putative; n=3; Trich... 71 2e-11
UniRef50_A3FPV6 Cluster: 60S ribosomal protein-like, putative; n... 69 1e-10
UniRef50_UPI00005A2ACC Cluster: PREDICTED: similar to ribosomal ... 68 2e-10
UniRef50_A7R5H8 Cluster: Chromosome undetermined scaffold_974, w... 67 3e-10
UniRef50_UPI00005A24EF Cluster: PREDICTED: similar to ribosomal ... 63 5e-09
UniRef50_Q7R0P2 Cluster: GLP_79_45017_44067; n=1; Giardia lambli... 61 3e-08
UniRef50_Q8SRC2 Cluster: 60S RIBOSOMAL PROTEIN L4; n=1; Encephal... 56 1e-06
UniRef50_Q673S8 Cluster: Ribosomal protein L4; n=3; cellular org... 50 6e-05
UniRef50_Q4FXU6 Cluster: Ribosomal protein L1a, putative; n=1; L... 49 8e-05
UniRef50_A7AUF0 Cluster: Ribosomal protein RPL4A; n=1; Babesia b... 48 1e-04
UniRef50_O28355 Cluster: 50S ribosomal protein L4P; n=9; Euryarc... 46 6e-04
UniRef50_Q4UES5 Cluster: 60S ribosomal subunit protein L4/L1, pu... 44 0.004
UniRef50_Q2NFV7 Cluster: 50S ribosomal protein L4P; n=2; Euryarc... 44 0.004
UniRef50_UPI0000DA3D75 Cluster: PREDICTED: similar to ribosomal ... 42 0.013
UniRef50_Q98S44 Cluster: 60s ribosomal protein L1; n=2; Cryptomo... 40 0.051
UniRef50_Q8TY91 Cluster: 50S ribosomal protein L4P; n=13; Euryar... 39 0.090
UniRef50_Q9UXA6 Cluster: 50S ribosomal protein L4P; n=3; Archaea... 38 0.27
UniRef50_Q8ZW51 Cluster: 50S ribosomal protein L4P; n=9; Archaea... 37 0.36
UniRef50_Q9HIR0 Cluster: 50S ribosomal protein L4P; n=4; Thermop... 36 0.84
UniRef50_A7QKL2 Cluster: Chromosome chr2 scaffold_113, whole gen... 35 1.5
UniRef50_P60847 Cluster: 50S ribosomal protein L4P; n=1; Nanoarc... 35 1.9
UniRef50_Q4FXU7 Cluster: Putative uncharacterized protein; n=2; ... 34 2.6
UniRef50_UPI0000EBC685 Cluster: PREDICTED: similar to Hrnr prote... 34 3.4
UniRef50_Q2T2X7 Cluster: Transcriptional regulator, GntR family;... 33 7.8
>UniRef50_Q5MGK5 Cluster: Ribosomal protein 23; n=2;
Endopterygota|Rep: Ribosomal protein 23 - Lonomia
obliqua (Moth)
Length = 274
Score = 137 bits (331), Expect = 2e-31
Identities = 61/83 (73%), Positives = 68/83 (81%)
Frame = +1
Query: 250 GTLIIFNKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPLFG 429
G LII+NKDQGLTR+FRNIPGV+ APGGH+GRF+IWTQSAF RLD +FG
Sbjct: 71 GPLIIYNKDQGLTRSFRNIPGVDMVNVNKLNLLHLAPGGHVGRFMIWTQSAFERLDAIFG 130
Query: 430 SWKTPSKQKKNFNLPQPKMANTD 498
SWKTPSK+KKNFNLPQPKMANTD
Sbjct: 131 SWKTPSKEKKNFNLPQPKMANTD 153
Score = 83.4 bits (197), Expect = 4e-15
Identities = 37/41 (90%), Positives = 40/41 (97%)
Frame = +2
Query: 134 AVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGP 256
AVIFLRR+KAWSD+LKVYKSQRLRAGKGKMRNRRR+ RKGP
Sbjct: 32 AVIFLRRIKAWSDVLKVYKSQRLRAGKGKMRNRRRLHRKGP 72
Score = 70.5 bits (165), Expect = 3e-11
Identities = 33/38 (86%), Positives = 36/38 (94%)
Frame = +3
Query: 510 LKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNP 623
LKS+EIR+VLRAP KRV+RATRKLNPLTN KAMLKLNP
Sbjct: 158 LKSEEIRRVLRAPIKRVVRATRKLNPLTNTKAMLKLNP 195
Score = 41.9 bits (94), Expect = 0.013
Identities = 15/25 (60%), Positives = 23/25 (92%)
Frame = +3
Query: 54 RGHIIEKIPELPLVVADKVQEINKT 128
RG++++ + E+PLVV+DK+QEINKT
Sbjct: 5 RGYVVDNVSEIPLVVSDKIQEINKT 29
>UniRef50_P09180 Cluster: 60S ribosomal protein L4; n=96;
Eukaryota|Rep: 60S ribosomal protein L4 - Drosophila
melanogaster (Fruit fly)
Length = 401
Score = 120 bits (288), Expect = 4e-26
Identities = 51/83 (61%), Positives = 63/83 (75%)
Frame = +1
Query: 250 GTLIIFNKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPLFG 429
G L++++KD+GL +AFRNIPG+E APGGH+GRFVIWT+SAF RL+ LFG
Sbjct: 209 GPLVVYDKDEGLRKAFRNIPGIETINVDKLNLLKLAPGGHVGRFVIWTESAFARLNDLFG 268
Query: 430 SWKTPSKQKKNFNLPQPKMANTD 498
+WK PS KK +NLPQPKMANTD
Sbjct: 269 TWKKPSTLKKGYNLPQPKMANTD 291
Score = 72.9 bits (171), Expect = 6e-12
Identities = 33/46 (71%), Positives = 39/46 (84%)
Frame = +2
Query: 119 QQDQXAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGP 256
Q+ + AVIFLRRLK W+DI KVYKSQR RAG+G MR+RRRI R+GP
Sbjct: 165 QKTKQAVIFLRRLKIWADIQKVYKSQRFRAGRGTMRDRRRIARRGP 210
Score = 58.4 bits (135), Expect = 1e-07
Identities = 26/38 (68%), Positives = 32/38 (84%)
Frame = +3
Query: 510 LKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNP 623
LKS+EIRKVLR P KRV R+ R+LNPLTN + ++KLNP
Sbjct: 296 LKSEEIRKVLRDPRKRVFRSVRRLNPLTNVRQLIKLNP 333
Score = 38.7 bits (86), Expect = 0.12
Identities = 14/27 (51%), Positives = 23/27 (85%)
Frame = +3
Query: 48 QARGHIIEKIPELPLVVADKVQEINKT 128
Q++GH+I+ + E PLVV+D+VQ++ KT
Sbjct: 141 QSKGHVIDGVSEFPLVVSDEVQKVQKT 167
>UniRef50_P36578 Cluster: 60S ribosomal protein L4; n=70;
Eukaryota|Rep: 60S ribosomal protein L4 - Homo sapiens
(Human)
Length = 427
Score = 99.5 bits (237), Expect = 6e-20
Identities = 42/83 (50%), Positives = 55/83 (66%)
Frame = +1
Query: 250 GTLIIFNKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPLFG 429
G II+N+D G+ +AFRNIPG+ APGGH+GRF IWT+SAF +LD L+G
Sbjct: 206 GPCIIYNEDNGIIKAFRNIPGITLLNVSKLNILKLAPGGHVGRFCIWTESAFRKLDELYG 265
Query: 430 SWKTPSKQKKNFNLPQPKMANTD 498
+W+ + K N+NLP KM NTD
Sbjct: 266 TWRKAASLKSNYNLPMHKMINTD 288
Score = 75.4 bits (177), Expect = 1e-12
Identities = 33/48 (68%), Positives = 42/48 (87%)
Frame = +2
Query: 113 GDQQDQXAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGP 256
G ++ + AV+ L++LKAW+DI KVY SQR+RAGKGKMRNRRRIQR+GP
Sbjct: 160 GYKKTKEAVLLLKKLKAWNDIKKVYASQRMRAGKGKMRNRRRIQRRGP 207
Score = 47.2 bits (107), Expect = 3e-04
Identities = 22/38 (57%), Positives = 27/38 (71%)
Frame = +3
Query: 510 LKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNP 623
LKS EI++ LRAP K++ R K NPL N + MLKLNP
Sbjct: 293 LKSPEIQRALRAPRKKIHRRVLKKNPLKNLRIMLKLNP 330
Score = 38.3 bits (85), Expect = 0.16
Identities = 16/26 (61%), Positives = 21/26 (80%)
Frame = +3
Query: 51 ARGHIIEKIPELPLVVADKVQEINKT 128
++GH IE++PELPLVV DKV+ KT
Sbjct: 139 SKGHRIEEVPELPLVVEDKVEGYKKT 164
>UniRef50_Q00UB0 Cluster: Ribosomal protein RPL1/RPL2/RL4L4; n=1;
Ostreococcus tauri|Rep: Ribosomal protein
RPL1/RPL2/RL4L4 - Ostreococcus tauri
Length = 404
Score = 91.5 bits (217), Expect = 2e-17
Identities = 41/83 (49%), Positives = 55/83 (66%)
Frame = +1
Query: 250 GTLIIFNKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPLFG 429
G L+++++D G+TRAFRNIPGVE APGGH+GRF+IWT+SAF +LD +FG
Sbjct: 209 GPLVVYSEDNGVTRAFRNIPGVELCSVDRLGLLTLAPGGHVGRFIIWTKSAFEKLDSIFG 268
Query: 430 SWKTPSKQKKNFNLPQPKMANTD 498
+ + S KK + P MA TD
Sbjct: 269 TSTSKSASKKGWKPPTNIMAQTD 291
Score = 52.4 bits (120), Expect = 9e-06
Identities = 24/41 (58%), Positives = 33/41 (80%)
Frame = +2
Query: 134 AVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGP 256
AV L++L A++DI KV S+ +R+GKGKMRNRR +QR+GP
Sbjct: 170 AVELLKQLGAYADIEKVKASRNVRSGKGKMRNRRYVQRRGP 210
Score = 37.9 bits (84), Expect = 0.21
Identities = 23/47 (48%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = +3
Query: 510 LKSDEIRKVLRAPNKRVIRATRKL--NPLTNNKAMLKLNPLRGRAEE 644
+ SDEI+ L AP IRA L NPL N AM KLNP A E
Sbjct: 296 INSDEIQSALNAPKLGAIRAHAPLKRNPLKNKSAMDKLNPYAKVARE 342
Score = 35.9 bits (79), Expect = 0.84
Identities = 15/26 (57%), Positives = 18/26 (69%)
Frame = +3
Query: 51 ARGHIIEKIPELPLVVADKVQEINKT 128
ARGH +E +PE+PLVV D I KT
Sbjct: 142 ARGHRVEGVPEVPLVVDDSASSIKKT 167
>UniRef50_Q0U8Q3 Cluster: Putative uncharacterized protein; n=1;
Phaeosphaeria nodorum|Rep: Putative uncharacterized
protein - Phaeosphaeria nodorum (Septoria nodorum)
Length = 349
Score = 88.6 bits (210), Expect = 1e-16
Identities = 43/86 (50%), Positives = 52/86 (60%), Gaps = 3/86 (3%)
Frame = +1
Query: 250 GTLIIFNKDQG---LTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDP 420
G L+I+N D+ L +AFRNIPGVE APGGHLGRF++WT SAFG LD
Sbjct: 185 GPLVIYNPDEDGKELVKAFRNIPGVETSSVYSMNLLQLAPGGHLGRFIVWTSSAFGALDT 244
Query: 421 LFGSWKTPSKQKKNFNLPQPKMANTD 498
++GS PS KK+F LP M D
Sbjct: 245 IYGSTTEPSALKKDFLLPSTMMKQPD 270
Score = 44.4 bits (100), Expect = 0.002
Identities = 21/41 (51%), Positives = 28/41 (68%)
Frame = +2
Query: 134 AVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGP 256
AV L+ + A +D K S++LRAGKGK+R RR QR+GP
Sbjct: 146 AVALLKAVGAGADCEKAKNSRKLRAGKGKLRGRRHKQRRGP 186
>UniRef50_Q3SEA6 Cluster: Ribosomal protein L4, putative; n=2;
Oligohymenophorea|Rep: Ribosomal protein L4, putative -
Paramecium tetraurelia
Length = 406
Score = 82.6 bits (195), Expect = 7e-15
Identities = 40/84 (47%), Positives = 52/84 (61%), Gaps = 1/84 (1%)
Frame = +1
Query: 250 GTLII-FNKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPLF 426
G L++ FN++ L +AFRN+PGVE APGG LGRFVIWTQSAF LD LF
Sbjct: 207 GPLVVYFNENAKLLKAFRNVPGVEVVNVTRLNLLQLAPGGQLGRFVIWTQSAFAHLDKLF 266
Query: 427 GSWKTPSKQKKNFNLPQPKMANTD 498
G+++ S K + L +P + N D
Sbjct: 267 GTYRYASVLKDGYQLLRPLLTNPD 290
Score = 37.1 bits (82), Expect = 0.36
Identities = 14/26 (53%), Positives = 20/26 (76%)
Frame = +3
Query: 51 ARGHIIEKIPELPLVVADKVQEINKT 128
ARGH I ++P++PLVV DK++ KT
Sbjct: 140 ARGHRISQVPQIPLVVEDKIESYEKT 165
Score = 35.9 bits (79), Expect = 0.84
Identities = 17/41 (41%), Positives = 26/41 (63%)
Frame = +2
Query: 134 AVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGP 256
A+ FL+R A+ D+ KV ++ +RAG K R ++ RKGP
Sbjct: 168 ALNFLKRFGAFEDVQKVVSTKVVRAGISKQRGKKYRVRKGP 208
>UniRef50_Q95YH2 Cluster: Ribosomal protein L4; n=1; Paramecium
caudatum|Rep: Ribosomal protein L4 - Paramecium caudatum
Length = 252
Score = 82.2 bits (194), Expect = 1e-14
Identities = 40/84 (47%), Positives = 52/84 (61%), Gaps = 1/84 (1%)
Frame = +1
Query: 250 GTLII-FNKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPLF 426
G L++ FN++ L +AFRN+PGVE APGG LGRFVIWTQSAF LD LF
Sbjct: 53 GPLVVYFNENAKLLKAFRNVPGVEVVNVTRLNLLQLAPGGQLGRFVIWTQSAFANLDKLF 112
Query: 427 GSWKTPSKQKKNFNLPQPKMANTD 498
G+++ S K + L +P + N D
Sbjct: 113 GTYRYSSILKDGYQLLRPLLTNPD 136
Score = 37.9 bits (84), Expect = 0.21
Identities = 17/46 (36%), Positives = 29/46 (63%)
Frame = +2
Query: 119 QQDQXAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGP 256
++ + A+ FL+R A+ D+ KV ++ +RAG K R ++ RKGP
Sbjct: 9 EKTKDALNFLKRFGAFEDVQKVVSTKTIRAGVSKSRGKKYRVRKGP 54
>UniRef50_Q1KYM6 Cluster: RPL4; n=1; Streblomastix strix|Rep: RPL4 -
Streblomastix strix
Length = 492
Score = 79.4 bits (187), Expect = 7e-14
Identities = 36/83 (43%), Positives = 51/83 (61%)
Frame = +1
Query: 250 GTLIIFNKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPLFG 429
G LI+ ++++GL AFRNI GV+ APGGHLGRF+IWT+ A+ +LD L+G
Sbjct: 206 GVLIVHDQNEGLANAFRNISGVDISNVXRLNIRDLAPGGHLGRFIIWTEGAYKKLDKLYG 265
Query: 430 SWKTPSKQKKNFNLPQPKMANTD 498
+ + K + P P + NTD
Sbjct: 266 TRFRTALLKNEYKHPTPSVTNTD 288
Score = 41.1 bits (92), Expect = 0.022
Identities = 17/26 (65%), Positives = 22/26 (84%)
Frame = +3
Query: 51 ARGHIIEKIPELPLVVADKVQEINKT 128
ARGH I+ +PELPLVV+D V++I KT
Sbjct: 139 ARGHKIDNVPELPLVVSDDVEQIKKT 164
Score = 39.9 bits (89), Expect = 0.051
Identities = 20/45 (44%), Positives = 28/45 (62%)
Frame = +2
Query: 119 QQDQXAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKG 253
++ + AV L LKA D+ +S+R+R G GK RNRR QR+G
Sbjct: 162 KKTKEAVKVLAALKASDDVKHSAESKRIRVGSGKARNRRYTQRRG 206
>UniRef50_Q4XUM2 Cluster: 60S ribosomal subunit protein L4/L1,
putative; n=5; Plasmodium|Rep: 60S ribosomal subunit
protein L4/L1, putative - Plasmodium chabaudi
Length = 411
Score = 76.2 bits (179), Expect = 6e-13
Identities = 35/83 (42%), Positives = 49/83 (59%)
Frame = +1
Query: 250 GTLIIFNKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPLFG 429
G LII++ D G+ +AFRNIPGV+ APGG +GR IW++ AF +LD ++G
Sbjct: 206 GPLIIYSXDSGIKKAFRNIPGVDLCNVTKLNLLKLAPGGSIGRLCIWSEDAFKKLDVIYG 265
Query: 430 SWKTPSKQKKNFNLPQPKMANTD 498
KKN+ LP+P + N D
Sbjct: 266 KTFQKYVTKKNYILPKPIVNNAD 288
Score = 33.5 bits (73), Expect = 4.5
Identities = 18/46 (39%), Positives = 27/46 (58%)
Frame = +2
Query: 119 QQDQXAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGP 256
Q+ + A+ FL L ++ ++ KS +LRA GKMRNR+ GP
Sbjct: 162 QKTKDALKFLISLGLRDEVNRLIKSXKLRARXGKMRNRKYKISNGP 207
>UniRef50_A7E7X3 Cluster: 60S ribosomal protein L4; n=2;
Sclerotiniaceae|Rep: 60S ribosomal protein L4 -
Sclerotinia sclerotiorum 1980
Length = 373
Score = 76.2 bits (179), Expect = 6e-13
Identities = 37/86 (43%), Positives = 51/86 (59%), Gaps = 3/86 (3%)
Frame = +1
Query: 250 GTLIIFN---KDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDP 420
G L++++ + L RAFRN+PGVE APGGHLGRF+IW+ SAF LD
Sbjct: 208 GPLVVYDGATDGKELVRAFRNLPGVETCDVYSLNLLQLAPGGHLGRFIIWSSSAFKALDN 267
Query: 421 LFGSWKTPSKQKKNFNLPQPKMANTD 498
++G+ PS KK+F LP ++ D
Sbjct: 268 IYGTTTAPSALKKDFLLPSNVVSQAD 293
Score = 44.0 bits (99), Expect = 0.003
Identities = 20/37 (54%), Positives = 27/37 (72%)
Frame = +2
Query: 146 LRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGP 256
L+ + A D+ KV S++LRAGKGK+R RR QR+GP
Sbjct: 173 LKTVGALKDVEKVKDSRKLRAGKGKLRGRRHRQRRGP 209
>UniRef50_UPI0000499FAF Cluster: 60S ribosomal protein L4; n=5;
Entamoeba histolytica HM-1:IMSS|Rep: 60S ribosomal
protein L4 - Entamoeba histolytica HM-1:IMSS
Length = 431
Score = 72.1 bits (169), Expect = 1e-11
Identities = 34/84 (40%), Positives = 50/84 (59%), Gaps = 1/84 (1%)
Frame = +1
Query: 250 GTLIIF-NKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPLF 426
G L+++ N D +AFRNIPGV+ APG H+GRF+IWT+SAF +L+ +F
Sbjct: 207 GPLVVYGNDDLQAVKAFRNIPGVDTCRVENLSVLNLAPGCHIGRFIIWTESAFKKLNTIF 266
Query: 427 GSWKTPSKQKKNFNLPQPKMANTD 498
G+ K ++ K F + +MA D
Sbjct: 267 GTQKKMAQGKSGFRIAHAQMAVPD 290
Score = 50.8 bits (116), Expect = 3e-05
Identities = 22/46 (47%), Positives = 35/46 (76%)
Frame = +2
Query: 119 QQDQXAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGP 256
++ + AV L+++ A+SD+LKV S+ +RAG+GKMR R+ +RKGP
Sbjct: 163 KKTKQAVYLLKKINAYSDVLKVIASKTVRAGQGKMRGRKIKERKGP 208
>UniRef50_A2E1Z6 Cluster: Ribosomal protein, putative; n=3;
Trichomonas vaginalis G3|Rep: Ribosomal protein,
putative - Trichomonas vaginalis G3
Length = 370
Score = 71.3 bits (167), Expect = 2e-11
Identities = 35/83 (42%), Positives = 48/83 (57%)
Frame = +1
Query: 250 GTLIIFNKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPLFG 429
G L+I+N+D+G+ +AFRNIPGVE AP +GR +WT+SAF LD ++
Sbjct: 203 GPLVIYNEDKGIVKAFRNIPGVETISVKALALAKLAPAAQVGRLTVWTESAFKALDGIYE 262
Query: 430 SWKTPSKQKKNFNLPQPKMANTD 498
S KK F+LP+ M N D
Sbjct: 263 S-------KKRFSLPRSIMTNAD 278
Score = 39.1 bits (87), Expect = 0.090
Identities = 15/27 (55%), Positives = 22/27 (81%)
Frame = +3
Query: 48 QARGHIIEKIPELPLVVADKVQEINKT 128
QARGH++ ++ E+P+VV D VQEI +T
Sbjct: 135 QARGHVLGEVKEVPIVVVDAVQEIKRT 161
>UniRef50_A3FPV6 Cluster: 60S ribosomal protein-like, putative; n=4;
Cryptosporidium|Rep: 60S ribosomal protein-like,
putative - Cryptosporidium parvum Iowa II
Length = 394
Score = 68.9 bits (161), Expect = 1e-10
Identities = 31/83 (37%), Positives = 45/83 (54%)
Frame = +1
Query: 250 GTLIIFNKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPLFG 429
G L+++ +D G+ +A RNI GV+ APGG GR I+T+ A RL ++G
Sbjct: 209 GPLVVYAEDNGIVKAMRNIKGVDTCSVERLNLLRLAPGGTFGRLTIFTKGAIKRLQEIYG 268
Query: 430 SWKTPSKQKKNFNLPQPKMANTD 498
S+ S K + LP+P M N D
Sbjct: 269 SYTHGSSSKVGYTLPRPAMTNAD 291
Score = 41.1 bits (92), Expect = 0.022
Identities = 16/26 (61%), Positives = 22/26 (84%)
Frame = +3
Query: 51 ARGHIIEKIPELPLVVADKVQEINKT 128
ARGH I +PELPLV+++++Q INKT
Sbjct: 140 ARGHRINNVPELPLVISNEIQNINKT 165
Score = 33.9 bits (74), Expect = 3.4
Identities = 14/29 (48%), Positives = 20/29 (68%)
Frame = +2
Query: 170 DILKVYKSQRLRAGKGKMRNRRRIQRKGP 256
++ ++ S +R GKGKMRNRRR+ GP
Sbjct: 182 EMKRIESSIAIRCGKGKMRNRRRVCAVGP 210
>UniRef50_UPI00005A2ACC Cluster: PREDICTED: similar to ribosomal
protein L4; n=1; Canis lupus familiaris|Rep: PREDICTED:
similar to ribosomal protein L4 - Canis familiaris
Length = 248
Score = 67.7 bits (158), Expect = 2e-10
Identities = 30/47 (63%), Positives = 39/47 (82%)
Frame = +2
Query: 113 GDQQDQXAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKG 253
G ++ + V+ L++LKAW+DI KVY SQR+RAGKGKMRNRR IQR+G
Sbjct: 101 GYKKTKEEVLLLKKLKAWNDIKKVYASQRMRAGKGKMRNRRPIQRRG 147
Score = 41.9 bits (94), Expect(2) = 0.003
Identities = 17/33 (51%), Positives = 22/33 (66%)
Frame = +1
Query: 400 AFGRLDPLFGSWKTPSKQKKNFNLPQPKMANTD 498
AF +LD L+G+W + K N+NLP KM NTD
Sbjct: 173 AFCKLDDLYGTWPKAASLKSNYNLPMHKMLNTD 205
Score = 40.7 bits (91), Expect = 0.029
Identities = 21/39 (53%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Frame = +3
Query: 510 LKSDEIRKVLRAPNKRVIRAT-RKLNPLTNNKAMLKLNP 623
LK I++ LRAP KR+ R +K NPL N + MLKLNP
Sbjct: 210 LKRPGIQRALRAPRKRIHRRVLKKKNPLKNLRLMLKLNP 248
Score = 21.4 bits (43), Expect(2) = 0.003
Identities = 7/15 (46%), Positives = 12/15 (80%)
Frame = +1
Query: 250 GTLIIFNKDQGLTRA 294
G+ II+N+D G+ +A
Sbjct: 147 GSCIIYNEDNGIIKA 161
>UniRef50_A7R5H8 Cluster: Chromosome undetermined scaffold_974,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome undetermined scaffold_974, whole genome
shotgun sequence - Vitis vinifera (Grape)
Length = 386
Score = 67.3 bits (157), Expect = 3e-10
Identities = 31/71 (43%), Positives = 46/71 (64%), Gaps = 1/71 (1%)
Frame = +1
Query: 250 GTLIIFNKDQG-LTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPLF 426
G LI++ + L +AFRNIPGVE APGGHLGRFVIWT+S+F +LD ++
Sbjct: 69 GPLIVYGMEGAKLVKAFRNIPGVEVANVDRLNLLKLAPGGHLGRFVIWTKSSFEKLDSIY 128
Query: 427 GSWKTPSKQKK 459
S++ ++++
Sbjct: 129 RSFEKKLRRRR 139
Score = 42.7 bits (96), Expect = 0.007
Identities = 20/46 (43%), Positives = 27/46 (58%)
Frame = +2
Query: 119 QQDQXAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGP 256
++ A+ L++ A+ D K S + GKGKMRNRR I RKGP
Sbjct: 25 EKTSAAIDILKQFDAYLDTEKAKDSHAIHPGKGKMRNRRYISRKGP 70
Score = 39.1 bits (87), Expect = 0.090
Identities = 15/26 (57%), Positives = 19/26 (73%)
Frame = +3
Query: 51 ARGHIIEKIPELPLVVADKVQEINKT 128
ARGH IE +PELPLV+ D + + KT
Sbjct: 2 ARGHRIESVPELPLVIGDSAESVEKT 27
>UniRef50_UPI00005A24EF Cluster: PREDICTED: similar to ribosomal
protein L4; n=1; Canis lupus familiaris|Rep: PREDICTED:
similar to ribosomal protein L4 - Canis familiaris
Length = 253
Score = 63.3 bits (147), Expect = 5e-09
Identities = 32/65 (49%), Positives = 43/65 (66%)
Frame = +2
Query: 113 GDQQDQXAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPS*SSTRIRV*LA 292
G ++ + AV+ L++LKAW+DI KVY SQR+RAGKGKMRN P+ S+ + V
Sbjct: 23 GYKKTEEAVLLLKKLKAWNDIKKVYASQRMRAGKGKMRNPLASSAGDPASSTMKTTVSSR 82
Query: 293 PSATS 307
PS TS
Sbjct: 83 PSETS 87
Score = 44.0 bits (99), Expect = 0.003
Identities = 21/38 (55%), Positives = 26/38 (68%)
Frame = +3
Query: 510 LKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNP 623
LKS EI++ L+AP K++ R K NPL N MLKLNP
Sbjct: 132 LKSPEIQRALQAPRKKIHRRVLKKNPLKNLGIMLKLNP 169
Score = 41.9 bits (94), Expect = 0.013
Identities = 17/33 (51%), Positives = 22/33 (66%)
Frame = +1
Query: 400 AFGRLDPLFGSWKTPSKQKKNFNLPQPKMANTD 498
AF +LD L+G+W + K N+NLP KM NTD
Sbjct: 95 AFCKLDDLYGTWHKAASLKSNYNLPMHKMLNTD 127
Score = 35.5 bits (78), Expect = 1.1
Identities = 15/26 (57%), Positives = 20/26 (76%)
Frame = +3
Query: 51 ARGHIIEKIPELPLVVADKVQEINKT 128
++GH I ++PELPLVV DKV+ KT
Sbjct: 2 SKGHRIGEVPELPLVVEDKVEGYKKT 27
>UniRef50_Q7R0P2 Cluster: GLP_79_45017_44067; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_79_45017_44067 - Giardia lamblia
ATCC 50803
Length = 316
Score = 60.9 bits (141), Expect = 3e-08
Identities = 30/83 (36%), Positives = 46/83 (55%)
Frame = +1
Query: 250 GTLIIFNKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPLFG 429
G L+I+N + + R FRN+PGV+ APG H GR ++WT+SAF LD ++
Sbjct: 194 GPLVIYNTED-VARGFRNLPGVDLCHVSSIRLLELAPGSHPGRLILWTKSAFASLDDVYA 252
Query: 430 SWKTPSKQKKNFNLPQPKMANTD 498
+ K+N+ LP+ + TD
Sbjct: 253 A-------KQNYTLPRSCITQTD 268
Score = 41.1 bits (92), Expect = 0.022
Identities = 18/41 (43%), Positives = 27/41 (65%)
Frame = +2
Query: 134 AVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGP 256
A+ ++ + D+ + S+ +RAG+GKMRNRR I RKGP
Sbjct: 155 ALAIIKAVGVLRDVERCKDSRHIRAGRGKMRNRRYITRKGP 195
>UniRef50_Q8SRC2 Cluster: 60S RIBOSOMAL PROTEIN L4; n=1;
Encephalitozoon cuniculi|Rep: 60S RIBOSOMAL PROTEIN L4 -
Encephalitozoon cuniculi
Length = 335
Score = 55.6 bits (128), Expect = 1e-06
Identities = 29/83 (34%), Positives = 42/83 (50%)
Frame = +1
Query: 250 GTLIIFNKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPLFG 429
G LI+ + + FRNI GV+ APGG GR +IWT+SAF +LD +FG
Sbjct: 203 GILIVHGESSEML-GFRNIRGVDQMSIDSLDLLELAPGGVAGRLIIWTESAFEKLDKIFG 261
Query: 430 SWKTPSKQKKNFNLPQPKMANTD 498
+ ++ F LP + + D
Sbjct: 262 GVEREAELTPGFKLPNRIVTHDD 284
Score = 45.2 bits (102), Expect = 0.001
Identities = 22/45 (48%), Positives = 30/45 (66%)
Frame = +2
Query: 119 QQDQXAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKG 253
++ + AV LR L ++ +V KS+ +R GKGKMRNRR QRKG
Sbjct: 159 RKTKDAVEILRNLNMTEELKRVEKSRGVRCGKGKMRNRRYTQRKG 203
>UniRef50_Q673S8 Cluster: Ribosomal protein L4; n=3; cellular
organisms|Rep: Ribosomal protein L4 - uncultured marine
group II euryarchaeote DeepAnt-JyKC7
Length = 304
Score = 49.6 bits (113), Expect = 6e-05
Identities = 21/54 (38%), Positives = 31/54 (57%)
Frame = +1
Query: 256 LIIFNKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLD 417
L++ ++ GL +A RNIPGV+ APGG GR +WT++A G L+
Sbjct: 251 LLVVSQTNGLAKAARNIPGVDIVVAKDLSAEDLAPGGDAGRLTVWTKAAIGALE 304
>UniRef50_Q4FXU6 Cluster: Ribosomal protein L1a, putative; n=1;
Leishmania major strain Friedlin|Rep: Ribosomal protein
L1a, putative - Leishmania major strain Friedlin
Length = 432
Score = 49.2 bits (112), Expect = 8e-05
Identities = 21/48 (43%), Positives = 34/48 (70%)
Frame = +2
Query: 113 GDQQDQXAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGP 256
G ++ + A+ FL+ + A D+ +V S+ +RAG+GKMRNRR + R+GP
Sbjct: 159 GYEKTKEAMAFLKAIAAIDDVNRVNDSREIRAGRGKMRNRRYVARRGP 206
Score = 33.9 bits (74), Expect = 3.4
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = +3
Query: 51 ARGHIIEKIPELPLVVADKVQEINKT 128
+RGH I +PE+PLVV D +Q KT
Sbjct: 138 SRGHQIGNVPEVPLVVEDSIQGYEKT 163
>UniRef50_A7AUF0 Cluster: Ribosomal protein RPL4A; n=1; Babesia
bovis|Rep: Ribosomal protein RPL4A - Babesia bovis
Length = 360
Score = 48.4 bits (110), Expect = 1e-04
Identities = 27/61 (44%), Positives = 32/61 (52%)
Frame = +1
Query: 289 RAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFN 468
RAFRNIPGVE AP G LGR +W++SAF LD P+K KN +
Sbjct: 213 RAFRNIPGVEVACVERLNLLKLAPAGALGRLCVWSKSAFEALDDYIK--MMPTKLLKNAD 270
Query: 469 L 471
L
Sbjct: 271 L 271
Score = 35.5 bits (78), Expect = 1.1
Identities = 14/26 (53%), Positives = 21/26 (80%)
Frame = +3
Query: 51 ARGHIIEKIPELPLVVADKVQEINKT 128
+RGH IE + E+P+VV D +++INKT
Sbjct: 138 SRGHRIEALREVPMVVDDAIEQINKT 163
>UniRef50_O28355 Cluster: 50S ribosomal protein L4P; n=9;
Euryarchaeota|Rep: 50S ribosomal protein L4P -
Archaeoglobus fulgidus
Length = 252
Score = 46.4 bits (105), Expect = 6e-04
Identities = 19/49 (38%), Positives = 28/49 (57%)
Frame = +1
Query: 256 LIIFNKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSA 402
L++ KD G+ +A +N+PGV+ APG H GR +WT+SA
Sbjct: 195 LLVVGKDDGVVKAAKNLPGVDAVVVKDLNVELLAPGCHPGRLTVWTKSA 243
Score = 34.3 bits (75), Expect = 2.6
Identities = 13/34 (38%), Positives = 24/34 (70%)
Frame = +2
Query: 149 RRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRK 250
R + ++D+ + + +R RAG+GKMR RR +++K
Sbjct: 159 RAIGVYADVERAKERKRYRAGRGKMRGRRYVKKK 192
>UniRef50_Q4UES5 Cluster: 60S ribosomal subunit protein L4/L1,
putative; n=2; Theileria|Rep: 60S ribosomal subunit
protein L4/L1, putative - Theileria annulata
Length = 426
Score = 43.6 bits (98), Expect = 0.004
Identities = 22/43 (51%), Positives = 26/43 (60%)
Frame = +1
Query: 289 RAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLD 417
RAFRNIPGV+ AP G LGR VI+++SAF LD
Sbjct: 212 RAFRNIPGVDVMSVEHMNLLKLAPAGTLGRLVIFSKSAFELLD 254
Score = 35.1 bits (77), Expect = 1.5
Identities = 13/26 (50%), Positives = 20/26 (76%)
Frame = +3
Query: 51 ARGHIIEKIPELPLVVADKVQEINKT 128
+RGH +E +PELPLV+ D ++ + KT
Sbjct: 138 SRGHRVESVPELPLVLDDTMETLTKT 163
>UniRef50_Q2NFV7 Cluster: 50S ribosomal protein L4P; n=2;
Euryarchaeota|Rep: 50S ribosomal protein L4P -
Methanosphaera stadtmanae (strain DSM 3091)
Length = 259
Score = 43.6 bits (98), Expect = 0.004
Identities = 21/59 (35%), Positives = 30/59 (50%)
Frame = +1
Query: 250 GTLIIFNKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPLF 426
G L++ D+G++ RN GV+ APG H GR I+T+SA +L LF
Sbjct: 196 GPLVVVGNDRGISLGARNHAGVDVVEVNNINAELLAPGTHAGRLTIYTKSAIEKLGDLF 254
>UniRef50_UPI0000DA3D75 Cluster: PREDICTED: similar to ribosomal
protein L4; n=3; Rattus norvegicus|Rep: PREDICTED:
similar to ribosomal protein L4 - Rattus norvegicus
Length = 140
Score = 41.9 bits (94), Expect = 0.013
Identities = 20/38 (52%), Positives = 25/38 (65%)
Frame = +3
Query: 510 LKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNP 623
LK EI++ L+AP K + K NPLTN + MLKLNP
Sbjct: 13 LKIPEIQRALQAPCKEIQHRVSKKNPLTNLRIMLKLNP 50
>UniRef50_Q98S44 Cluster: 60s ribosomal protein L1; n=2;
Cryptomonadaceae|Rep: 60s ribosomal protein L1 -
Guillardia theta (Cryptomonas phi)
Length = 255
Score = 39.9 bits (89), Expect = 0.051
Identities = 19/58 (32%), Positives = 29/58 (50%)
Frame = +1
Query: 250 GTLIIFNKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPL 423
G L++F + ++ RNI ++ APGGHLGR IW+ AF L+ +
Sbjct: 200 GPLLVFKNN---LKSLRNIANIDCMKISALNLTKLAPGGHLGRLCIWSSKAFQMLNTI 254
Score = 32.7 bits (71), Expect = 7.8
Identities = 12/29 (41%), Positives = 21/29 (72%)
Frame = +3
Query: 51 ARGHIIEKIPELPLVVADKVQEINKTXXL 137
+RG+ ++ IPE+P V+ D +++I KT L
Sbjct: 134 SRGYRVKTIPEIPFVIEDSIEKIPKTRDL 162
>UniRef50_Q8TY91 Cluster: 50S ribosomal protein L4P; n=13;
Euryarchaeota|Rep: 50S ribosomal protein L4P -
Methanopyrus kandleri
Length = 260
Score = 39.1 bits (87), Expect = 0.090
Identities = 19/58 (32%), Positives = 28/58 (48%)
Frame = +1
Query: 256 LIIFNKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPLFG 429
LI+ ++D+G+ RN PGV+ APG H GR ++T A L+ G
Sbjct: 202 LIVVDEDEGIKLGARNHPGVDVVEAMHLGVEHLAPGAHPGRLTVFTPGALEVLEERLG 259
Score = 37.1 bits (82), Expect = 0.36
Identities = 14/36 (38%), Positives = 24/36 (66%)
Frame = +2
Query: 143 FLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRK 250
F + + W+D+ + ++R+RAGKGK R RR ++ K
Sbjct: 164 FFKSVGLWADVERAKSNRRIRAGKGKRRGRRYVKPK 199
Score = 35.9 bits (79), Expect = 0.84
Identities = 12/24 (50%), Positives = 20/24 (83%)
Frame = +3
Query: 54 RGHIIEKIPELPLVVADKVQEINK 125
RGH+I+ +P LP+VV D+++ +NK
Sbjct: 134 RGHVIDDVPHLPVVVVDELKSLNK 157
>UniRef50_Q9UXA6 Cluster: 50S ribosomal protein L4P; n=3;
Archaea|Rep: 50S ribosomal protein L4P - Sulfolobus
solfataricus
Length = 267
Score = 37.5 bits (83), Expect = 0.27
Identities = 16/38 (42%), Positives = 26/38 (68%)
Frame = +2
Query: 143 FLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGP 256
FL+++ + D+ +V + R+RAGKGKMR R+ + GP
Sbjct: 166 FLKKIGVYDDVERVKERIRIRAGKGKMRGRKYKEPIGP 203
Score = 36.7 bits (81), Expect = 0.48
Identities = 17/54 (31%), Positives = 28/54 (51%)
Frame = +1
Query: 256 LIIFNKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLD 417
+I+ + + + +A RN+ GV+ APG H GR I+T+S+ LD
Sbjct: 205 IIVHDSNSPIIKAARNLAGVDVVNAKDVSVIHLAPGAHPGRLTIYTESSIKILD 258
>UniRef50_Q8ZW51 Cluster: 50S ribosomal protein L4P; n=9;
Archaea|Rep: 50S ribosomal protein L4P - Pyrobaculum
aerophilum
Length = 283
Score = 37.1 bits (82), Expect = 0.36
Identities = 13/25 (52%), Positives = 20/25 (80%)
Frame = +3
Query: 51 ARGHIIEKIPELPLVVADKVQEINK 125
ARGH++EK+P LP+VV ++IN+
Sbjct: 156 ARGHVVEKVPSLPVVVVGDAEKINR 180
Score = 37.1 bits (82), Expect = 0.36
Identities = 19/57 (33%), Positives = 27/57 (47%)
Frame = +1
Query: 256 LIIFNKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPLF 426
+++ + + L A RN PGV+ APGG GR +WT A +L LF
Sbjct: 226 VVVSDLNAPLIAAVRNFPGVDVVAVNNLNILVLAPGGVPGRLTLWTAPAVEKLRGLF 282
Score = 32.7 bits (71), Expect = 7.8
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +2
Query: 155 LKAWSDILKVYKSQRLRAGKGKMRNRR 235
L W D+ + + ++RAGKGKMR RR
Sbjct: 191 LGLWPDVERAAEGVKIRAGKGKMRGRR 217
>UniRef50_Q9HIR0 Cluster: 50S ribosomal protein L4P; n=4;
Thermoplasmatales|Rep: 50S ribosomal protein L4P -
Thermoplasma acidophilum
Length = 255
Score = 35.9 bits (79), Expect = 0.84
Identities = 17/46 (36%), Positives = 27/46 (58%)
Frame = +2
Query: 113 GDQQDQXAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRK 250
G + + A+ L+ L + DI + + + +RAG+GKMR RR Q K
Sbjct: 151 GINKTKDAIALLKNLGVYEDIERSREGKHIRAGRGKMRGRRYKQPK 196
Score = 35.1 bits (77), Expect = 1.5
Identities = 17/54 (31%), Positives = 28/54 (51%)
Frame = +1
Query: 253 TLIIFNKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRL 414
+++I ++ +AFR++PGV+ APGG GR I+T+ A L
Sbjct: 197 SVLIVARNSSAMKAFRSLPGVDIASPNSLSIRKLAPGGVGGRLTIFTEGAIESL 250
>UniRef50_A7QKL2 Cluster: Chromosome chr2 scaffold_113, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr2 scaffold_113, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 145
Score = 35.1 bits (77), Expect = 1.5
Identities = 14/26 (53%), Positives = 19/26 (73%)
Frame = +3
Query: 51 ARGHIIEKIPELPLVVADKVQEINKT 128
ARGH IE + ELPLV+ D + ++KT
Sbjct: 24 ARGHRIESVLELPLVIGDSTKSVDKT 49
>UniRef50_P60847 Cluster: 50S ribosomal protein L4P; n=1;
Nanoarchaeum equitans|Rep: 50S ribosomal protein L4P -
Nanoarchaeum equitans
Length = 268
Score = 34.7 bits (76), Expect = 1.9
Identities = 18/37 (48%), Positives = 25/37 (67%)
Frame = +2
Query: 146 LRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGP 256
L +L ++ +VY+ +R RAGKGK R R I+RKGP
Sbjct: 172 LLKLGLEKELERVYEIKR-RAGKGKRRGRAYIERKGP 207
>UniRef50_Q4FXU7 Cluster: Putative uncharacterized protein; n=2;
Leishmania|Rep: Putative uncharacterized protein -
Leishmania major strain Friedlin
Length = 534
Score = 34.3 bits (75), Expect = 2.6
Identities = 19/69 (27%), Positives = 31/69 (44%)
Frame = +3
Query: 288 SRLPQHPRCGXXXXXXXXXXXXGSGRPSWTFRHLDSVRIRQA*PLIRVMEDTIKTKEELQ 467
+R+PQH R G G+ P W R LD+V +R A + + ++ +E L
Sbjct: 269 ARVPQHLRAGPGECERAEPAAPGARWPRWPLRDLDAVCVRAAGQDLWHVHGGVRCEEGLH 328
Query: 468 PAPTEDGQH 494
A + +H
Sbjct: 329 AAGADADEH 337
>UniRef50_UPI0000EBC685 Cluster: PREDICTED: similar to Hrnr protein;
n=1; Bos taurus|Rep: PREDICTED: similar to Hrnr protein
- Bos taurus
Length = 1606
Score = 33.9 bits (74), Expect = 3.4
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +2
Query: 383 SSGLSPHSAGLTPYSGHGRHHQNKRRTSTCPNRR 484
SSG H +GL+ S +G+H R++S+C +R
Sbjct: 566 SSGFGQHGSGLSQSSSYGQHGSTSRQSSSCGQQR 599
>UniRef50_Q2T2X7 Cluster: Transcriptional regulator, GntR family;
n=11; pseudomallei group|Rep: Transcriptional regulator,
GntR family - Burkholderia thailandensis (strain E264 /
ATCC 700388 / DSM 13276 /CIP 106301)
Length = 439
Score = 32.7 bits (71), Expect = 7.8
Identities = 19/53 (35%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
Frame = +2
Query: 89 PGCSRQSPGDQQD-QXAVIFLR-RLKAWSDILKVYKSQRLRAGKGKMRNRRRI 241
PGC RQ P D+ + +F R RL S + +V+ + R+R+ + +R++RRI
Sbjct: 124 PGCLRQWPCDRNTLRSRFLFPRQRLSRPSPLSRVFVASRMRSRRRALRSQRRI 176
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 621,952,910
Number of Sequences: 1657284
Number of extensions: 12103522
Number of successful extensions: 30921
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 29772
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30904
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 48541014171
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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