Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10522
         (645 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   2.8  
AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    22   3.8  
AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory recept...    22   5.0  
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    21   8.7  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -2

Query: 476  WGRLKFFFCFDGVFHDPNK 420
            WG+ + F C  G+  D NK
Sbjct: 1299 WGKYEVFNCAPGLHWDNNK 1317


>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +2

Query: 398 PHSAGLTPYSGHGRHHQN 451
           P S G++PY+    HH +
Sbjct: 40  PLSLGMSPYASSQHHHHH 57


>AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory receptor
           candidate 50 protein.
          Length = 350

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -2

Query: 494 VLAIFGWGRLKFFFCFDGVFHDPN 423
           VL+ F     +F++C+D  F+  N
Sbjct: 240 VLSTFSICITQFYYCYDSGFNSDN 263


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = +2

Query: 377 VSSSGLSPHSAGLTPYSGHGRHHQNKRRTSTCPNR 481
           +S SG +P+ +  +PY  +     +K   S C +R
Sbjct: 58  LSPSGNTPNKSSTSPYPPNHPLSGSKHLCSICGDR 92


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,284
Number of Sequences: 336
Number of extensions: 2659
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16552695
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)