Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10522
         (645 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...    97   1e-21
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...    97   2e-21
SPAC8F11.06 |||nuclear envelope protein |Schizosaccharomyces pom...    28   1.0  
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S...    27   2.3  
SPBC36.04 |cys11|cys1a|cysteine synthase |Schizosaccharomyces po...    25   9.3  
SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    25   9.3  
SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyc...    25   9.3  
SPAC8E11.01c ||SPAC959.01|beta-fructofuranosidase|Schizosaccharo...    25   9.3  
SPAC6F6.07c |rps13||40S ribosomal protein S13|Schizosaccharomyce...    25   9.3  

>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 97.5 bits (232), Expect = 1e-21
 Identities = 44/83 (53%), Positives = 57/83 (68%)
 Frame = +1

Query: 250 GTLIIFNKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPLFG 429
           G L++FN+D G+ +AFRNIPGVE            APGGHLGRFVIWT+SAFG LD +FG
Sbjct: 206 GPLVVFNEDAGIVKAFRNIPGVEIVNVRRLNLLQLAPGGHLGRFVIWTKSAFGLLDSVFG 265

Query: 430 SWKTPSKQKKNFNLPQPKMANTD 498
           S    ++ KKN+ LP+  ++N D
Sbjct: 266 STTEAAQLKKNYFLPENIISNAD 288



 Score = 60.5 bits (140), Expect = 2e-10
 Identities = 25/46 (54%), Positives = 37/46 (80%)
 Frame = +2

Query: 119 QQDQXAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGP 256
           Q+ + AV  L+ +KA+ D++KV  S++LRAGKGK+RNRR +QR+GP
Sbjct: 162 QKTKEAVALLKEIKAYRDVVKVANSRKLRAGKGKLRNRRHVQRRGP 207



 Score = 39.5 bits (88), Expect = 4e-04
 Identities = 18/26 (69%), Positives = 20/26 (76%)
 Frame = +3

Query: 51  ARGHIIEKIPELPLVVADKVQEINKT 128
           ARGH IE+IPE+PLVV D VQ   KT
Sbjct: 139 ARGHRIEEIPEVPLVVDDAVQSFQKT 164



 Score = 31.9 bits (69), Expect = 0.081
 Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
 Frame = +3

Query: 510 LKSDEIRKVLRAPN-KRVIRA-TRKLNPLTNNKAMLKLNP 623
           + SDEI+ +++A    RV RA  +K NPL N   + +LNP
Sbjct: 293 INSDEIQSIVKAAGPSRVKRAHVQKKNPLKNKAVLARLNP 332


>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 97.1 bits (231), Expect = 2e-21
 Identities = 44/83 (53%), Positives = 57/83 (68%)
 Frame = +1

Query: 250 GTLIIFNKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPLFG 429
           G L++FN+D G+ +AFRNIPGVE            APGGHLGRFVIWT+SAFG LD +FG
Sbjct: 206 GPLVVFNEDTGIVKAFRNIPGVEIVNVRRLNLLQLAPGGHLGRFVIWTKSAFGLLDSVFG 265

Query: 430 SWKTPSKQKKNFNLPQPKMANTD 498
           S    ++ KKN+ LP+  ++N D
Sbjct: 266 STTEVAQLKKNYFLPENIISNAD 288



 Score = 60.9 bits (141), Expect = 2e-10
 Identities = 25/46 (54%), Positives = 37/46 (80%)
 Frame = +2

Query: 119 QQDQXAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGP 256
           Q+ + AV  L+ +KA+ D++KV  S++LRAGKGK+RNRR +QR+GP
Sbjct: 162 QKTKEAVALLKEIKAYRDVIKVANSRKLRAGKGKLRNRRHVQRRGP 207



 Score = 39.5 bits (88), Expect = 4e-04
 Identities = 18/26 (69%), Positives = 20/26 (76%)
 Frame = +3

Query: 51  ARGHIIEKIPELPLVVADKVQEINKT 128
           ARGH IE+IPE+PLVV D VQ   KT
Sbjct: 139 ARGHRIEEIPEVPLVVDDAVQSFQKT 164



 Score = 31.5 bits (68), Expect = 0.11
 Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
 Frame = +3

Query: 510 LKSDEIRKVLRAPN-KRVIRA-TRKLNPLTNNKAMLKLNP 623
           + SDEI+ +++A    RV RA  +K NPL N   + +LNP
Sbjct: 293 INSDEIQSIVKAAGPSRVKRAHVQKKNPLKNKAVLSRLNP 332


>SPAC8F11.06 |||nuclear envelope protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 297

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 6/83 (7%)
 Frame = +3

Query: 390 DSVRIRQA*PLIRVMEDTIKTKEELQPAPTEDGQH*PHTSLKSDEIRKVLR--APN---K 554
           DSV      P   +++   KT+ E  P P +        +LK   +R+ LR   PN    
Sbjct: 16  DSVLNTPIRPKYEILKSKKKTQNENDPEPMDISMSPDEKNLKKSTVRRKLRKSKPNSSSN 75

Query: 555 RVIRATRKLNPLTN-NKAMLKLN 620
           +V   TR L   +N + A++K N
Sbjct: 76  QVSSRTRALTKRSNSSNAIIKAN 98


>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 971

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 15/53 (28%), Positives = 21/53 (39%)
 Frame = -2

Query: 569 STDHAFVGSTEDLPDLIRLERRVRSVLAIFGWGRLKFFFCFDGVFHDPNKGSS 411
           S  H +V + E +P    L  R   +L   GW        + G   +PNK  S
Sbjct: 600 SLAHVWVVAYEFVPGGPILRERTSYILIFIGWNLAALVPAYSGESKEPNKADS 652


>SPBC36.04 |cys11|cys1a|cysteine synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 351

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 3/60 (5%)
 Frame = +2

Query: 389 GLSPHSAGLTPYSGH-GRHHQNKRRTSTCPNRRWPTLTSHVSQV**DQE--GPPCSQQTR 559
           G   H   + P+S     +HQ +R   + PN  W     +V+ +    E  GP    QT+
Sbjct: 120 GAEVHPVPVAPFSNPLNYNHQARRHAESTPNASWTDQFDNVANLLSHYETTGPEIWDQTK 179


>SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 497

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +2

Query: 377 VSSSGLSPHSAGLTPYSGHGRHHQNK 454
           VS S    HS    P+S  GRH++ K
Sbjct: 120 VSRSSSIGHSGSTAPWSSVGRHNRKK 145


>SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 430

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 9/19 (47%), Positives = 9/19 (47%)
 Frame = +2

Query: 431 HGRHHQNKRRTSTCPNRRW 487
           HG H       S CPN RW
Sbjct: 378 HGGHTNRISEFSWCPNERW 396


>SPAC8E11.01c
           ||SPAC959.01|beta-fructofuranosidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 508

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = -2

Query: 623 RIEFQHRLVISEWVQFACSTDHAFVGSTEDLPDLIRL 513
           ++ F H L + +WV+ +       +G   + PD +RL
Sbjct: 173 KVLFYHSLNLRDWVKLSEFGSAGVLGYQYECPDFVRL 209


>SPAC6F6.07c |rps13||40S ribosomal protein S13|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 151

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +2

Query: 362 EAILDVSSSGLSPHSAGLTPYSGHG 436
           E IL  S  G+SP   G+T    HG
Sbjct: 35  EQILKFSKKGMSPSQIGVTLRDSHG 59


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,451,384
Number of Sequences: 5004
Number of extensions: 46379
Number of successful extensions: 116
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)