Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10522
(645 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0578 + 4295386-4296489,4297394-4297507 92 3e-19
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272... 91 7e-19
01_01_0612 + 4565422-4565481,4565597-4565671,4565760-4566332,456... 30 1.4
02_05_1166 - 34633770-34634301,34634559-34635181,34635279-34637216 30 1.8
08_02_1476 - 27372288-27372310,27372508-27372586,27372818-273730... 28 7.3
03_03_0125 - 14630078-14630136,14630197-14631160 28 7.3
03_03_0122 - 14617879-14618871 28 7.3
02_04_0073 - 19471254-19472681 28 7.3
01_06_0160 - 27095727-27096008,27096164-27096652,27096983-270971... 28 7.3
>07_01_0578 + 4295386-4296489,4297394-4297507
Length = 405
Score = 92.3 bits (219), Expect = 3e-19
Identities = 41/84 (48%), Positives = 58/84 (69%), Gaps = 1/84 (1%)
Frame = +1
Query: 250 GTLIIFNKDQG-LTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPLF 426
G LI++ + + +AFRN+PGV+ APGGHLGRFVIWT+SAF +L+ ++
Sbjct: 210 GPLIVYGTEGSKIVKAFRNLPGVDVANVERLNLLDLAPGGHLGRFVIWTESAFKKLEEVY 269
Query: 427 GSWKTPSKQKKNFNLPQPKMANTD 498
G+++ PS +KK F LP+PKMAN D
Sbjct: 270 GTFEAPSLKKKGFILPRPKMANAD 293
Score = 44.8 bits (101), Expect = 6e-05
Identities = 21/46 (45%), Positives = 30/46 (65%)
Frame = +2
Query: 119 QQDQXAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGP 256
++ A+ L+++ A++D K S +R GKGKMRNRR I RKGP
Sbjct: 166 EKTSQAIKILKQVGAYADAEKAKDSVGIRPGKGKMRNRRYINRKGP 211
Score = 42.7 bits (96), Expect = 2e-04
Identities = 20/45 (44%), Positives = 29/45 (64%)
Frame = +3
Query: 510 LKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPLRGRAEE 644
+ SDE++ V++ NK V R ++ NPL N A+LKLNP G A +
Sbjct: 298 INSDEVQSVVKPLNKEVKRREKRKNPLKNVAAVLKLNPYFGTARK 342
Score = 39.5 bits (88), Expect = 0.002
Identities = 16/26 (61%), Positives = 20/26 (76%)
Frame = +3
Query: 51 ARGHIIEKIPELPLVVADKVQEINKT 128
ARGH IE +PELPLV++D + I KT
Sbjct: 143 ARGHRIETVPELPLVISDSAESIEKT 168
>03_06_0298 -
32925441-32925998,32926371-32926730,32927161-32927230,
32927642-32927797,32929181-32929242,32929339-32929352,
32930421-32930520,32931474-32932574
Length = 806
Score = 91.1 bits (216), Expect = 7e-19
Identities = 41/84 (48%), Positives = 56/84 (66%), Gaps = 1/84 (1%)
Frame = +1
Query: 250 GTLIIFNKDQG-LTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPLF 426
G LI++ + + +AFRN+PGV+ APGGHLGRFVIWT+ AF +LD ++
Sbjct: 209 GPLIVYGTEGSKVVKAFRNLPGVDVANVERLNLLDLAPGGHLGRFVIWTECAFKKLDEVY 268
Query: 427 GSWKTPSKQKKNFNLPQPKMANTD 498
G + TP+ +KK F LP+PKMAN D
Sbjct: 269 GGFDTPALKKKGFVLPRPKMANAD 292
Score = 45.6 bits (103), Expect = 3e-05
Identities = 21/37 (56%), Positives = 27/37 (72%)
Frame = +2
Query: 146 LRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGP 256
L+++ A++D K S +RAGKGKMRNRR I RKGP
Sbjct: 174 LKQIGAYADAEKTKDSVAIRAGKGKMRNRRYINRKGP 210
Score = 39.1 bits (87), Expect = 0.003
Identities = 16/26 (61%), Positives = 20/26 (76%)
Frame = +3
Query: 51 ARGHIIEKIPELPLVVADKVQEINKT 128
ARGH IE +PE PLVV+D ++ I KT
Sbjct: 142 ARGHRIEGVPEFPLVVSDSIESIEKT 167
Score = 38.7 bits (86), Expect = 0.004
Identities = 19/45 (42%), Positives = 27/45 (60%)
Frame = +3
Query: 510 LKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPLRGRAEE 644
+ SDE++ V++ NK V + NPL N A+LKLNP G A +
Sbjct: 297 INSDEVQSVVKPINKEVKLREARRNPLKNVAAVLKLNPYFGTARK 341
>01_01_0612 +
4565422-4565481,4565597-4565671,4565760-4566332,
4566438-4566551,4566676-4567377
Length = 507
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = -1
Query: 420 GVKPAECGLSPDDETSKMASRSQLQEVQLVNIQELHTGDVA 298
G+ A G++ DD+ K ASR L + ++N+ +GD A
Sbjct: 147 GLSCARGGVASDDDDDKQASRRALPPMPVLNLSSDSSGDAA 187
>02_05_1166 - 34633770-34634301,34634559-34635181,34635279-34637216
Length = 1030
Score = 29.9 bits (64), Expect = 1.8
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Frame = +1
Query: 355 APG--GHLGRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPKMANT 495
APG G GR+V+ SA LDP F SW S++ K F++ + A++
Sbjct: 670 APGVDGCSGRYVV-AASAGNALDPGFCSWDYYSREAKAFHIEEISHASS 717
>08_02_1476 -
27372288-27372310,27372508-27372586,27372818-27373085,
27373346-27373410,27373611-27373757
Length = 193
Score = 27.9 bits (59), Expect = 7.3
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = -2
Query: 386 MTKRPRWPPGASFRRFSLLTFRSSTPGMLRK 294
M RP WP AS R S+ R PG R+
Sbjct: 1 MAARPSWPSTASCRSRSVAYLRQQPPGHRRR 31
>03_03_0125 - 14630078-14630136,14630197-14631160
Length = 340
Score = 27.9 bits (59), Expect = 7.3
Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Frame = +1
Query: 373 GRFVIWTQSAFGRL-DPLFGSWK 438
G FV+W AFG L L G+WK
Sbjct: 127 GGFVVWADRAFGPLAGSLLGTWK 149
>03_03_0122 - 14617879-14618871
Length = 330
Score = 27.9 bits (59), Expect = 7.3
Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Frame = +1
Query: 373 GRFVIWTQSAFGRL-DPLFGSWK 438
G FV+W AFG L L G+WK
Sbjct: 124 GGFVVWADRAFGPLAGSLLGTWK 146
>02_04_0073 - 19471254-19472681
Length = 475
Score = 27.9 bits (59), Expect = 7.3
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +2
Query: 395 SPHSAGLTPYSGHGRHHQNKRRTSTCPN 478
+P G +P S HG HH++++ T N
Sbjct: 20 APRPRGASPLSSHGHHHRSRKIHRTFNN 47
>01_06_0160 -
27095727-27096008,27096164-27096652,27096983-27097132,
27097656-27097920,27097995-27098274,27100311-27100388,
27100597-27101240,27101334-27101412,27101489-27101612,
27101782-27101882,27102870-27103068
Length = 896
Score = 27.9 bits (59), Expect = 7.3
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = -1
Query: 405 ECGLSPDDETSKMASRSQLQEVQ 337
+CG+ PD+ S++ S+ QEV+
Sbjct: 51 DCGMDPDEAVSRLLSQDTFQEVK 73
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,471,301
Number of Sequences: 37544
Number of extensions: 364531
Number of successful extensions: 1078
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1044
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1078
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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