Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10522
         (645 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)                53   2e-07
SB_14316| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_31780| Best HMM Match : Pkinase (HMM E-Value=0)                     28   7.5  
SB_22853| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  

>SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)
          Length = 299

 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 24/43 (55%), Positives = 27/43 (62%)
 Frame = +1

Query: 250 GTLIIFNKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGR 378
           G LII+N DQGL +AFRN+PGVE             PGGHLGR
Sbjct: 203 GPLIIYNNDQGLRQAFRNLPGVELQHVDRLNLLKLCPGGHLGR 245



 Score = 50.8 bits (116), Expect = 9e-07
 Identities = 22/41 (53%), Positives = 30/41 (73%)
 Frame = +2

Query: 134 AVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGP 256
           AV  L+ + A+ D+ K   S+++RAGKGKMRNRR + RKGP
Sbjct: 164 AVKLLKAVNAYEDVEKCIDSKKIRAGKGKMRNRRTVMRKGP 204



 Score = 38.3 bits (85), Expect = 0.005
 Identities = 15/26 (57%), Positives = 21/26 (80%)
 Frame = +3

Query: 51  ARGHIIEKIPELPLVVADKVQEINKT 128
           ARGH IEKI E+PLV++D ++ + KT
Sbjct: 136 ARGHRIEKIAEVPLVISDAIESVTKT 161


>SB_14316| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1472

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
 Frame = +3

Query: 513 KSDEIRKVLRAPNKRV---IRATRKLNPLTNNKAMLKL 617
           +SD I K+    NK++   ++    L+ LTNNKA LKL
Sbjct: 27  QSDVIHKIPNEANKQIGLRVKCLALLDYLTNNKAQLKL 64


>SB_31780| Best HMM Match : Pkinase (HMM E-Value=0)
          Length = 964

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 13/45 (28%), Positives = 26/45 (57%)
 Frame = -1

Query: 396 LSPDDETSKMASRSQLQEVQLVNIQELHTGDVAEGASQTLILVED 262
           L+ D+E   +   + L++V + +   + T  VA G S TL+L+++
Sbjct: 557 LALDNEDGPVEEVAVLRQVSVPDFNSVGTSSVAMGTSHTLVLLQN 601


>SB_22853| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 134

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = -1

Query: 384 DETSKMASRSQLQEVQLVNIQE-LHTGDVA 298
           DETS  +SRS++Q   LV   E LH  D++
Sbjct: 39  DETSSPSSRSRIQASSLVKTNEFLHARDIS 68


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,519,665
Number of Sequences: 59808
Number of extensions: 388079
Number of successful extensions: 1129
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1045
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1128
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1633044375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)