Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10522
         (645 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal pro...    84   9e-17

>AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 4 protein.
          Length = 345

 Score = 83.8 bits (198), Expect = 9e-17
 Identities = 39/84 (46%), Positives = 54/84 (64%), Gaps = 1/84 (1%)
 Frame = +1

Query: 250 GTLIIFNKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPLFG 429
           G ++I+ +D    RAFRNIPGV+            APGGHLGR +IWT+SAF +LD ++G
Sbjct: 205 GPVVIYGQDAECARAFRNIPGVDVMNVERLNLLKLAPGGHLGRLIIWTESAFKKLDTIYG 264

Query: 430 SWKTPSKQ-KKNFNLPQPKMANTD 498
           +    S Q KK +++P P MAN+D
Sbjct: 265 TTVANSSQLKKGWSVPLPIMANSD 288



 Score = 58.4 bits (135), Expect = 4e-09
 Identities = 26/46 (56%), Positives = 35/46 (76%)
 Frame = +2

Query: 119 QQDQXAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGP 256
           ++ + AV+FLRR   W+DI KVY S+R RAGKGK+RNR+  Q+ GP
Sbjct: 161 RKTKEAVVFLRRSHLWADIEKVYNSKRNRAGKGKLRNRQHKQKLGP 206



 Score = 41.5 bits (93), Expect = 5e-04
 Identities = 16/27 (59%), Positives = 23/27 (85%)
 Frame = +3

Query: 48  QARGHIIEKIPELPLVVADKVQEINKT 128
           QARGH+I+++ E+PLVV+DKV+   KT
Sbjct: 137 QARGHVIDQVAEVPLVVSDKVESFRKT 163



 Score = 32.7 bits (71), Expect = 0.23
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +3

Query: 510 LKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNP 623
           ++S+E+ K +RAP K  +      NPL     + KLNP
Sbjct: 293 IRSEEVVKAIRAPKKNPVLPKVHRNPLKKRTLLYKLNP 330


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,866,660
Number of Sequences: 27780
Number of extensions: 271177
Number of successful extensions: 666
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 665
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)