Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10522
         (645 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S...    90   1e-18
At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) str...    89   2e-18
At3g31540.1 68416.m04025 hypothetical protein                          28   4.6  
At1g71360.1 68414.m08237 expressed protein low similarity to PIR...    27   8.1  

>At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S
           roibosomal protein L4, Arabidopsis thaliana,
           EMBL:CAA79104
          Length = 407

 Score = 90.2 bits (214), Expect = 1e-18
 Identities = 40/84 (47%), Positives = 57/84 (67%), Gaps = 1/84 (1%)
 Frame = +1

Query: 250 GTLIIFNKDQG-LTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPLF 426
           G L++F  +   + +AFRN+PGVE            APGGHLGRFVIWT+SAF +L+ ++
Sbjct: 212 GPLVVFGTEGAKIVKAFRNLPGVELCHVERLNLLKLAPGGHLGRFVIWTKSAFEKLESIY 271

Query: 427 GSWKTPSKQKKNFNLPQPKMANTD 498
           GS++ PS++KK + LP+ KM N D
Sbjct: 272 GSFEKPSEKKKGYVLPRAKMVNAD 295



 Score = 44.4 bits (100), Expect = 7e-05
 Identities = 21/46 (45%), Positives = 29/46 (63%)
 Frame = +2

Query: 119 QQDQXAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGP 256
           ++   A+  L+++ A+ D  K   S  +R GKGKMRNRR I RKGP
Sbjct: 168 EKTSAAIKVLKQIGAYDDAEKAKNSIGIRPGKGKMRNRRYISRKGP 213



 Score = 38.7 bits (86), Expect = 0.003
 Identities = 15/26 (57%), Positives = 20/26 (76%)
 Frame = +3

Query: 51  ARGHIIEKIPELPLVVADKVQEINKT 128
           ARGH IE +PE+PLVV+D  + + KT
Sbjct: 145 ARGHKIENVPEMPLVVSDSAEAVEKT 170



 Score = 32.3 bits (70), Expect = 0.28
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = +3

Query: 510 LKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNP 623
           + SDE++ V+        RA  K NPL N   M KLNP
Sbjct: 300 INSDEVQSVVNPIKDGSKRAVLKKNPLKNLNVMFKLNP 337


>At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) strong
           similarity to 60S ribosomal protein L1 GB:P49691
          Length = 406

 Score = 89.0 bits (211), Expect = 2e-18
 Identities = 39/84 (46%), Positives = 57/84 (67%), Gaps = 1/84 (1%)
 Frame = +1

Query: 250 GTLIIFNKDQG-LTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGRFVIWTQSAFGRLDPLF 426
           G L+++  +   + +AFRN+PGVE            APGGHLGRFVIWT+SAF +L+ ++
Sbjct: 211 GPLVVYGTEGSKIVKAFRNLPGVELCHVERLNLLKLAPGGHLGRFVIWTKSAFEKLESIY 270

Query: 427 GSWKTPSKQKKNFNLPQPKMANTD 498
           GS++ PS++KK + LP+ KM N D
Sbjct: 271 GSFEKPSEKKKGYVLPRAKMVNAD 294



 Score = 44.4 bits (100), Expect = 7e-05
 Identities = 21/46 (45%), Positives = 29/46 (63%)
 Frame = +2

Query: 119 QQDQXAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGP 256
           ++   A+  L+++ A+ D  K   S  +R GKGKMRNRR I RKGP
Sbjct: 167 EKTSAAIKVLKQIGAYDDAEKAKNSIGIRPGKGKMRNRRYISRKGP 212



 Score = 38.7 bits (86), Expect = 0.003
 Identities = 15/26 (57%), Positives = 20/26 (76%)
 Frame = +3

Query: 51  ARGHIIEKIPELPLVVADKVQEINKT 128
           ARGH IE +PE+PLVV+D  + + KT
Sbjct: 144 ARGHKIENVPEMPLVVSDSAEAVEKT 169



 Score = 37.5 bits (83), Expect = 0.008
 Identities = 19/38 (50%), Positives = 22/38 (57%)
 Frame = +3

Query: 510 LKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNP 623
           + SDEI+ V+    K   RA  K NPL N   MLKLNP
Sbjct: 299 INSDEIQSVVNPIKKDAKRAVLKKNPLKNLNVMLKLNP 336


>At3g31540.1 68416.m04025 hypothetical protein
          Length = 699

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 28/102 (27%), Positives = 43/102 (42%), Gaps = 6/102 (5%)
 Frame = +2

Query: 23  CYRRPSARSG*RT-HY*KD--SRASP---GCSRQSPGDQQDQXAVIFLRRLKAWSDILKV 184
           C+R  SAR    T H+ +D   RA     G S  S  +  D     F+    +   I +V
Sbjct: 312 CHRELSARRCHWTKHFSRDRVERALKLFHGVSCPSSSESSDHRTQFFVDMQTSKPTIREV 371

Query: 185 YKSQRLRAGKGKMRNRRRIQRKGPS*SSTRIRV*LAPSATSP 310
           Y  +RL A K +    RR+  +  +   +R R  + P   +P
Sbjct: 372 YDKKRLAAEKKRAAEERRVMEESGAAEPSRARE-VVPEVAAP 412


>At1g71360.1 68414.m08237 expressed protein low similarity to
           PIR|JC7185 chromosome 1 C1orf9 protein [Homo sapiens]
          Length = 459

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 12/45 (26%), Positives = 25/45 (55%)
 Frame = +3

Query: 405 RQA*PLIRVMEDTIKTKEELQPAPTEDGQH*PHTSLKSDEIRKVL 539
           ++A P   V++D +  ++   P P E+ +H P + +  D + K+L
Sbjct: 258 QEASPENAVVKDEVSLEKRKLPDPVEEIKHQPGSRMPGDTVLKIL 302


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,421,449
Number of Sequences: 28952
Number of extensions: 266770
Number of successful extensions: 723
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 697
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 723
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1334473344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)