Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10521
(744 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1223 + 35033273-35033353,35033455-35033539,35033613-350336... 57 1e-08
02_05_0515 + 29689259-29689535,29689867-29690209,29690475-296907... 33 0.32
02_05_1108 - 34166672-34166695,34166864-34166932,34167031-341671... 31 1.3
02_05_1103 - 34136955-34136978,34137147-34137215,34137314-341374... 31 1.3
02_05_1100 - 34108581-34108584,34109646-34109701,34110470-341105... 31 1.3
07_01_0552 + 4109906-4109983,4110422-4110484,4110496-4110525,411... 30 2.2
05_02_0131 - 6919143-6920125,6920334-6920529 29 2.9
05_02_0128 - 6890918-6891900,6892929-6893124 29 2.9
12_02_0943 - 24662147-24662195,24662440-24662834,24662979-246630... 29 3.9
11_06_0754 - 26935647-26937780,26940890-26941827 29 3.9
01_01_0968 - 7618357-7618529,7618891-7619094,7620896-7621139,762... 29 3.9
06_03_0052 - 16027570-16027617,16027789-16027795,16028103-160283... 29 5.2
>02_05_1223 +
35033273-35033353,35033455-35033539,35033613-35033683,
35034400-35034531,35034654-35034769,35035128-35035251,
35035349-35035417,35035508-35035628,35035707-35035843
Length = 311
Score = 57.2 bits (132), Expect = 1e-08
Identities = 30/80 (37%), Positives = 49/80 (61%), Gaps = 1/80 (1%)
Frame = +1
Query: 16 YHLLDEESIAKAVRYSNVVINLVGRDYETKNFKYNDVHVDGVRRIARICREE-GVERFIH 192
Y+ D +SI + SNVVINL+GR+YET+N+ +++V+ ++A I +E G+ RFI
Sbjct: 33 YNPRDVDSIKAVMAKSNVVINLIGREYETRNYGFDEVNHHMAEQLAMISKEHGGIMRFIQ 92
Query: 193 LSYLNAEEHPKPLVLKKPSA 252
+S L A +L+ +A
Sbjct: 93 VSSLGASASSPSRMLRAKAA 112
Score = 57.2 bits (132), Expect = 1e-08
Identities = 35/92 (38%), Positives = 51/92 (55%)
Frame = +3
Query: 261 SKYLGECAVREEYPTATIIRASDIYGSEDRFLRSLVNKMRSHSNLMPLYKNGLATVKQPV 440
+K GE +V +E+P ATI+R + + G+EDR L + + +PL +G +T QPV
Sbjct: 109 AKAAGEESVLKEFPEATIMRPATMIGTEDRILNRWA-QFAKNWGFLPLVDSG-STKIQPV 166
Query: 441 FVSDVAQGIVNAARDDDTKCEVYKPLGQNATY 536
+V DVA IVN+ +DD T LG Y
Sbjct: 167 YVVDVAAAIVNSLKDDGTSMGKTYELGGPEIY 198
>02_05_0515 +
29689259-29689535,29689867-29690209,29690475-29690746,
29691282-29691478,29691874-29692237,29692831-29692898
Length = 506
Score = 32.7 bits (71), Expect = 0.32
Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Frame = +1
Query: 31 EESIAKAVRYSNVVINLVGRDYETKNF----KYNDVHVDGVRRIARICREEGVERFIHLS 198
+E + KA+R + V +L K + ++V+++G + C E GV R +++S
Sbjct: 98 KEDVGKALRGVDCVFHLASYGMSGKEMVQAGRADEVNINGTCNVLDACHEHGVRRLVYVS 157
Query: 199 YLNAEEHPKPLV 234
N +P+V
Sbjct: 158 TYNVVFGGEPIV 169
>02_05_1108 -
34166672-34166695,34166864-34166932,34167031-34167154,
34167192-34167256,34167726-34167854,34168473-34168547,
34171613-34171777,34171864-34172063,34172866-34172963,
34173719-34173819,34173915-34174040
Length = 391
Score = 30.7 bits (66), Expect = 1.3
Identities = 13/21 (61%), Positives = 16/21 (76%)
Frame = +3
Query: 432 QPVFVSDVAQGIVNAARDDDT 494
QPV+V DVA IVN+ +DD T
Sbjct: 322 QPVYVVDVAAAIVNSLKDDGT 342
>02_05_1103 -
34136955-34136978,34137147-34137215,34137314-34137437,
34137475-34137539,34138009-34138137,34138756-34138830,
34141896-34142060,34142147-34142346,34143149-34143246,
34144002-34144102,34144198-34144323
Length = 391
Score = 30.7 bits (66), Expect = 1.3
Identities = 13/21 (61%), Positives = 16/21 (76%)
Frame = +3
Query: 432 QPVFVSDVAQGIVNAARDDDT 494
QPV+V DVA IVN+ +DD T
Sbjct: 322 QPVYVVDVAAAIVNSLKDDGT 342
>02_05_1100 -
34108581-34108584,34109646-34109701,34110470-34110509,
34110955-34111066,34111690-34111767,34112004-34112088,
34112596-34112664,34112763-34112886,34112924-34112988,
34113458-34113586,34114205-34114279,34117344-34117508,
34117595-34117794,34118597-34118694,34119450-34119550,
34119649-34119774
Length = 508
Score = 30.7 bits (66), Expect = 1.3
Identities = 13/21 (61%), Positives = 16/21 (76%)
Frame = +3
Query: 432 QPVFVSDVAQGIVNAARDDDT 494
QPV+V DVA IVN+ +DD T
Sbjct: 322 QPVYVVDVAAAIVNSLKDDGT 342
>07_01_0552 + 4109906-4109983,4110422-4110484,4110496-4110525,
4110567-4110621,4111046-4111143,4112259-4112417,
4112518-4112577,4113436-4113624,4113749-4113802,
4113959-4114045,4114149-4114881,4115282-4115373,
4115739-4115812,4116097-4116199,4116342-4117204,
4117649-4117724,4117861-4117972,4118092-4118168,
4118272-4118352,4118710-4118789,4118860-4118875
Length = 1059
Score = 29.9 bits (64), Expect = 2.2
Identities = 16/60 (26%), Positives = 30/60 (50%)
Frame = +3
Query: 366 VNKMRSHSNLMPLYKNGLATVKQPVFVSDVAQGIVNAARDDDTKCEVYKPLGQNATYLPI 545
+NK + H+ + PLYK ++ P+F+S + + V TK +Y+ G + P+
Sbjct: 876 LNK-KFHARIKPLYKQRFFSILMPIFLSKIKESTVMT-----TKLVLYRAFGHIISNAPV 929
>05_02_0131 - 6919143-6920125,6920334-6920529
Length = 392
Score = 29.5 bits (63), Expect = 2.9
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +1
Query: 145 RIARICREEGVE-RFIHLSYLNAEEHPKPLVLKKPS 249
++ RIC G+E R+IHL EHP+ + PS
Sbjct: 61 KMKRICHRSGIEKRYIHLDEKLIREHPEIIDKHMPS 96
>05_02_0128 - 6890918-6891900,6892929-6893124
Length = 392
Score = 29.5 bits (63), Expect = 2.9
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +1
Query: 145 RIARICREEGVE-RFIHLSYLNAEEHPKPLVLKKPS 249
++ RIC G+E R+IHL EHP+ + PS
Sbjct: 61 KMKRICHRSGIEKRYIHLDEKLIREHPEIIDKHMPS 96
>12_02_0943 -
24662147-24662195,24662440-24662834,24662979-24663057,
24663129-24663250,24663363-24663449,24663543-24663891,
24664227-24664540
Length = 464
Score = 29.1 bits (62), Expect = 3.9
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Frame = -2
Query: 560 KTNQPNRQVSSV-LAQRLVDFTFSVVVARGVHDTL-SDVRHKHRLFHSR*SVFIE 402
+ P+R+ + V AQ+L F+F+ A G HD L S +R K + F S S F E
Sbjct: 317 REENPSREHTIVRTAQKLKPFSFNKFSADGYHDFLPSRLRPKFQKFDSDESTFSE 371
>11_06_0754 - 26935647-26937780,26940890-26941827
Length = 1023
Score = 29.1 bits (62), Expect = 3.9
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +1
Query: 169 EGVERFIHLSYLNAEEHPKPLVL 237
EG+++ + LSY N EH KP VL
Sbjct: 446 EGIKQVLDLSYNNLSEHLKPCVL 468
>01_01_0968 -
7618357-7618529,7618891-7619094,7620896-7621139,
7623008-7623151,7623272-7623487
Length = 326
Score = 29.1 bits (62), Expect = 3.9
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +1
Query: 28 DEESIAKAVRYSNVVINLVGRDYETKNFKYNDVHVDGVRRIARICREEG-VERFIHLSY 201
D ES+ A+R ++VVI+ VG V +DG ++ +E G V+RF+ Y
Sbjct: 77 DRESLVAAIRQADVVISAVGH--------RGTVELDGQLKVVEAIKEAGNVKRFVPSEY 127
>06_03_0052 -
16027570-16027617,16027789-16027795,16028103-16028341,
16028432-16028566,16028670-16028888
Length = 215
Score = 28.7 bits (61), Expect = 5.2
Identities = 26/88 (29%), Positives = 45/88 (51%)
Frame = +1
Query: 28 DEESIAKAVRYSNVVINLVGRDYETKNFKYNDVHVDGVRRIARICREEGVERFIHLSYLN 207
D + + KAVR ++VVI++VG Y+DV + ++ IA I ++RFI + N
Sbjct: 78 DHDLLVKAVRAADVVISVVG---------YHDVG-EQMKIIAAIKEAGNIKRFIPSDFGN 127
Query: 208 AEEHPKPLVLKKPSA*K*ASIWESVQSE 291
+H + K + A I +V++E
Sbjct: 128 DADHAHIVEPAKATFDVEAQIRRTVEAE 155
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,963,757
Number of Sequences: 37544
Number of extensions: 374728
Number of successful extensions: 805
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 782
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 804
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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