Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10521
         (744 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24675| Best HMM Match : No HMM Matches (HMM E-Value=.)              96   3e-20
SB_32677| Best HMM Match : SapB_1 (HMM E-Value=4.1)                    29   3.0  
SB_2107| Best HMM Match : zf-B_box (HMM E-Value=3.9e-08)               29   5.3  

>SB_24675| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 329

 Score = 95.9 bits (228), Expect = 3e-20
 Identities = 42/68 (61%), Positives = 54/68 (79%)
 Frame = +1

Query: 7   FTPYHLLDEESIAKAVRYSNVVINLVGRDYETKNFKYNDVHVDGVRRIARICREEGVERF 186
           F  +HL DEESIAK V++SNVV+NL+GR +ET+NF + +VHVDG R IA+  +E GVER 
Sbjct: 72  FFDFHLKDEESIAKMVKHSNVVVNLIGRGFETRNFNFEEVHVDGARTIAKAAKEAGVERL 131

Query: 187 IHLSYLNA 210
           IH+S LNA
Sbjct: 132 IHVSALNA 139



 Score = 74.5 bits (175), Expect = 8e-14
 Identities = 38/93 (40%), Positives = 61/93 (65%)
 Frame = +3

Query: 261 SKYLGECAVREEYPTATIIRASDIYGSEDRFLRSLVNKMRSHSNLMPLYKNGLATVKQPV 440
           +K LGE AVREE+P ATI+R   ++G ED+FL +    +RS    +PL + G+ T K PV
Sbjct: 150 TKALGEQAVREEFPNATILRPGTVFGHEDKFL-NYYAYLRSLPLGIPLIEGGMNTKKMPV 208

Query: 441 FVSDVAQGIVNAARDDDTKCEVYKPLGQNATYL 539
           +V+DVAQ I+ A +++ +  + ++ +G +  YL
Sbjct: 209 YVADVAQSILEAIKEEASVGQTFELVGPSEYYL 241


>SB_32677| Best HMM Match : SapB_1 (HMM E-Value=4.1)
          Length = 256

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = -2

Query: 647 KQLSGAVSGRTSCRSECIHPIFRPSSLVCKTNQPNRQVSSVL 522
           K + G V+ R   R+ CI P+F  + L+ K  +   Q+S++L
Sbjct: 168 KSVFGKVAHRKGIRAACICPVFTDTPLLDKIKEEMPQMSTLL 209


>SB_2107| Best HMM Match : zf-B_box (HMM E-Value=3.9e-08)
          Length = 599

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +2

Query: 254 ENKQVFGRVCSQRGIPNCHYYPSIRYLWFRRQIFEV 361
           E +Q++G+ C ++ +P  +YY    Y W    +F V
Sbjct: 527 EGQQIWGQSCFKKLLPEPNYYYGNNYKWEDGDVFGV 562


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,265,515
Number of Sequences: 59808
Number of extensions: 445311
Number of successful extensions: 1252
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1251
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2010148439
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)