Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10521
         (744 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g20360.1 68415.m02377 expressed protein                             57   1e-08
At1g19540.1 68414.m02434 isoflavone reductase, putative similar ...    30   1.4  
At3g23660.1 68416.m02975 transport protein, putative similar to ...    29   2.5  
At1g32220.1 68414.m03963 expressed protein                             29   2.5  
At1g30000.1 68414.m03669 glycoside hydrolase family 47 protein s...    29   4.3  
At2g42650.1 68415.m05278 60S ribosomal protein-related similar t...    28   5.7  
At1g16930.1 68414.m02053 F-box family protein contains F-box dom...    28   7.5  
At3g52690.1 68416.m05804 hypothetical protein predicted proteins...    27   9.9  
At1g64260.1 68414.m07281 zinc finger protein-related contains Pf...    27   9.9  

>At2g20360.1 68415.m02377 expressed protein
          Length = 402

 Score = 57.2 bits (132), Expect = 1e-08
 Identities = 28/76 (36%), Positives = 46/76 (60%), Gaps = 1/76 (1%)
 Frame = +1

Query: 28  DEESIAKAVRYSNVVINLVGRDYETKNFKYNDVHVDGVRRIARICREE-GVERFIHLSYL 204
           DE+SI   +  +NVVINL+GR+YET+NF + D +     ++A + +E  G+ R+I +S L
Sbjct: 127 DEDSIKAVMAKANVVINLIGREYETRNFSFEDANHHIAEKLALVAKEHGGIMRYIQVSCL 186

Query: 205 NAEEHPKPLVLKKPSA 252
            A       +L+  +A
Sbjct: 187 GASVSSPSRMLRAKAA 202



 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 30/76 (39%), Positives = 41/76 (53%)
 Frame = +3

Query: 261 SKYLGECAVREEYPTATIIRASDIYGSEDRFLRSLVNKMRSHSNLMPLYKNGLATVKQPV 440
           +K   E AV    P ATI+R + + G+EDR L      ++ +   +PL   G  T  QPV
Sbjct: 199 AKAAAEEAVLNALPEATIMRPATMIGTEDRILNPWSMFVKKY-GFLPLIGGG-TTKFQPV 256

Query: 441 FVSDVAQGIVNAARDD 488
           +V DVA  IV A +DD
Sbjct: 257 YVVDVAAAIVAALKDD 272


>At1g19540.1 68414.m02434 isoflavone reductase, putative similar to
           SP|P52577; contains isoflavone reductase domain PF02716
          Length = 310

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 15/48 (31%), Positives = 30/48 (62%)
 Frame = +1

Query: 22  LLDEESIAKAVRYSNVVINLVGRDYETKNFKYNDVHVDGVRRIARICR 165
           L D+ES+ KA++  +VVI+ VGR ++T+     ++ +D ++    + R
Sbjct: 62  LSDKESLVKAIKQVDVVISAVGR-FQTEILNQTNI-IDAIKESGNVKR 107


>At3g23660.1 68416.m02975 transport protein, putative similar to
           Swiss-Prot:Q15436 protein transport protein Sec23A [Homo
           sapiens]
          Length = 765

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 17/58 (29%), Positives = 31/58 (53%)
 Frame = +3

Query: 285 VREEYPTATIIRASDIYGSEDRFLRSLVNKMRSHSNLMPLYKNGLATVKQPVFVSDVA 458
           VRE +P   ++   D +GS+ RFL + +N   +++N      N ++T    +F  DV+
Sbjct: 699 VRERFPVPRLV-VCDQHGSQARFLLAKLNPSATYNN-----ANEMSTGSDVIFTDDVS 750


>At1g32220.1 68414.m03963 expressed protein
          Length = 296

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 20/54 (37%), Positives = 27/54 (50%)
 Frame = +3

Query: 330 IYGSEDRFLRSLVNKMRSHSNLMPLYKNGLATVKQPVFVSDVAQGIVNAARDDD 491
           IY S +RF+R L +   S   L P           PV V D+A  ++NA +DDD
Sbjct: 235 IYDSAERFIRPLRSLPASDLILAP-----------PVNVDDLALAVINAVKDDD 277


>At1g30000.1 68414.m03669 glycoside hydrolase family 47 protein
           similar to GI:5579331 from [Homo sapiens]; contains Pfam
           profile PF01532: Glycosyl hydrolase family 47
          Length = 624

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 578 DEKWGGYIRYDMKYDPILPL 637
           D  W GY +Y M YD ++P+
Sbjct: 137 DHAWSGYRKYAMGYDELMPI 156


>At2g42650.1 68415.m05278 60S ribosomal protein-related similar to
           PBK1 protein (GI:3668141) [Homo sapiens]; weak
           similarity to 60S ribosomal protein L10a.
           (Swiss-Prot:Q9SW75) [Chlamydomonas reinhardtii]
          Length = 372

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 29/95 (30%), Positives = 45/95 (47%), Gaps = 3/95 (3%)
 Frame = +3

Query: 252 LKISKYLGECAVREEYPTATIIRASDIYGSEDRFLRSLVNKMRSHSNLMPLYKN--GLAT 425
           +K++K   E     E  TAT+    D+  S  +++RSL  K+ S S  +PLY+    L  
Sbjct: 189 IKVAKLSMESDDIVENVTATLNGVVDVLPSRWKYIRSLHLKL-SESLSLPLYQTVPYLQL 247

Query: 426 VKQPVFVSDVAQGIVNAARD-DDTKCEVYKPLGQN 527
              P+ V +V  G   A  D DD+  +  K   +N
Sbjct: 248 KIDPLGVEEVKNGEGLAKSDVDDSSSKSVKTKKKN 282


>At1g16930.1 68414.m02053 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 449

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
 Frame = +1

Query: 22  LLDEESIAKAV---RYSNVVINLVGRDYETKNFKYNDVHVDGVRRIARICREEGVERF 186
           L  +ES+  +V   R+ N+ +++   D ++ NF  +DV V  V R      E+ +ERF
Sbjct: 32  LSTKESVCTSVLSKRWRNLWLHVPVLDLDSNNFPDDDVFVSFVNRFLGSENEQHLERF 89


>At3g52690.1 68416.m05804 hypothetical protein predicted proteins,
           Arabidopsis thaliana
          Length = 299

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = +3

Query: 660 FHQLIHSEIFTGKELKGKLLQIM 728
           F+QL+H EI+T KE    LL++M
Sbjct: 161 FYQLVHLEIYTCKEEWWNLLKLM 183


>At1g64260.1 68414.m07281 zinc finger protein-related contains Pfam
           profiles PF03108: MuDR family transposase, PF04434: SWIM
           zinc finger
          Length = 719

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 16/58 (27%), Positives = 26/58 (44%)
 Frame = +3

Query: 129 C*WRKKNCQNLQRRRS*EIHSSVLFKC*RTSETSCPEETVCLKISKYLGECAVREEYP 302
           C  R++NC   +  +       V +KC  +   +  EE   ++I+KY G      EYP
Sbjct: 205 CIRRRRNCIVRETEKEMYTFECVRWKCKWSLRAARMEEHGLVEITKYTGPHTCSHEYP 262


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,642,271
Number of Sequences: 28952
Number of extensions: 316574
Number of successful extensions: 789
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 788
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1643603136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)