Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10519
         (748 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces...   113   3e-26
SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein L15b|Schizos...   113   3e-26
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy...    29   0.93 
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    27   3.8  
SPCC330.12c |sdh3||succinate dehydrogenase |Schizosaccharomyces ...    26   5.0  
SPAC23H3.15c ||SPAC25H1.01c|sequence orphan|Schizosaccharomyces ...    25   8.7  

>SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 201

 Score =  113 bits (271), Expect = 3e-26
 Identities = 52/83 (62%), Positives = 59/83 (71%)
 Frame = +1

Query: 259 KGATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXSSYWVAQDSSYKYFEVILVD 438
           KG TYGKP   GVN LK  R+ +  AEE            +SYWV QD++YK+FEVILVD
Sbjct: 77  KGQTYGKPVHQGVNHLKYQRSARCTAEERVGRYCSNLRVLNSYWVNQDATYKFFEVILVD 136

Query: 439 PSHKAIRRDPKINWIVNAVHKHR 507
           PSHKAIRRDP+INWIVN VHKHR
Sbjct: 137 PSHKAIRRDPRINWIVNPVHKHR 159



 Score = 89.8 bits (213), Expect = 4e-19
 Identities = 39/57 (68%), Positives = 48/57 (84%)
 Frame = +2

Query: 32  MGAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQ 202
           MGAY+Y++EL +KK SDV  FL RVR W+YRQ+  +HRA RP+RPDKARRLGY+AKQ
Sbjct: 1   MGAYKYLEELAKKKQSDVNLFLSRVRAWEYRQMNVIHRASRPSRPDKARRLGYKAKQ 57



 Score = 54.0 bits (124), Expect = 2e-08
 Identities = 25/43 (58%), Positives = 31/43 (72%)
 Frame = +3

Query: 513 RGLTSAGRSSRGLGKGHRYSQTKGGSRRAAWLRRNTLQLRRKR 641
           RGLTS G+ SRG+GKGHR++ +    + A WLR NTL LRR R
Sbjct: 162 RGLTSIGKKSRGIGKGHRFNNS---PQHATWLRHNTLSLRRYR 201


>SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein
           L15b|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 201

 Score =  113 bits (271), Expect = 3e-26
 Identities = 52/83 (62%), Positives = 59/83 (71%)
 Frame = +1

Query: 259 KGATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXSSYWVAQDSSYKYFEVILVD 438
           KG TYGKP   GVN LK  R+ +  AEE            +SYWV QD++YK+FEVILVD
Sbjct: 77  KGQTYGKPVHQGVNHLKYQRSARCTAEERVGRYCSNLRVLNSYWVNQDATYKFFEVILVD 136

Query: 439 PSHKAIRRDPKINWIVNAVHKHR 507
           PSHKAIRRDP+INWIVN VHKHR
Sbjct: 137 PSHKAIRRDPRINWIVNPVHKHR 159



 Score = 89.8 bits (213), Expect = 4e-19
 Identities = 39/57 (68%), Positives = 48/57 (84%)
 Frame = +2

Query: 32  MGAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQ 202
           MGAY+Y++EL +KK SDV  FL RVR W+YRQ+  +HRA RP+RPDKARRLGY+AKQ
Sbjct: 1   MGAYKYLEELAKKKQSDVNLFLSRVRAWEYRQMNVIHRASRPSRPDKARRLGYKAKQ 57



 Score = 55.6 bits (128), Expect = 7e-09
 Identities = 26/43 (60%), Positives = 31/43 (72%)
 Frame = +3

Query: 513 RGLTSAGRSSRGLGKGHRYSQTKGGSRRAAWLRRNTLQLRRKR 641
           RGLTS G+ SRG+GKGHRY+ +    + A WLR NTL LRR R
Sbjct: 162 RGLTSIGKKSRGIGKGHRYNNS---PQHATWLRHNTLSLRRYR 201


>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1142

 Score = 28.7 bits (61), Expect = 0.93
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +2

Query: 392 LHKILHTSISRLSSWTRHTRPFVAILRSTGS*MLYISI 505
           L+KIL  S  ++ ++T H  P V ++ S     LYIS+
Sbjct: 47  LYKILQISAPKVGNFTIHDAPVVGLIDSILEYYLYISV 84


>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
            protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +1

Query: 397  QDSSYKYFEVILVDPSHKAIRRDPKINWIVNAVHK 501
            +  S KY E     P H  +   PK  WI++ +HK
Sbjct: 1182 KSESNKYQEQAYSTPLHHTLNVLPKNKWILSRMHK 1216


>SPCC330.12c |sdh3||succinate dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 180

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 7/19 (36%), Positives = 15/19 (78%)
 Frame = +1

Query: 463 DPKINWIVNAVHKHRGCVV 519
           +P++ W ++++H+  GCVV
Sbjct: 68  EPQLTWYLSSLHRITGCVV 86


>SPAC23H3.15c ||SPAC25H1.01c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 325

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = +3

Query: 501 ASWMRG-LTSAGRSSRGLGKG-HRYSQTKGGSRRAAWLRRN 617
           A+  RG ++SAG S  G GKG +    T   +RRAA   RN
Sbjct: 229 ANKTRGAVSSAGYSGEGYGKGTYATDTTAEANRRAATGTRN 269


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,992,243
Number of Sequences: 5004
Number of extensions: 58398
Number of successful extensions: 149
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)