Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10519
         (748 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46389| Best HMM Match : No HMM Matches (HMM E-Value=.)             111   4e-25
SB_52883| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.19 
SB_19195| Best HMM Match : LEA_4 (HMM E-Value=0.00053)                 32   0.43 
SB_3451| Best HMM Match : HOK_GEF (HMM E-Value=9.4)                    29   4.0  

>SB_46389| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 204

 Score =  111 bits (268), Expect = 4e-25
 Identities = 51/83 (61%), Positives = 59/83 (71%)
 Frame = +1

Query: 259 KGATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXSSYWVAQDSSYKYFEVILVD 438
           KGATYGKP + GVN+LK  R+L+S+AEE            +SYWV QDS YKYFEVI+VD
Sbjct: 77  KGATYGKPVNQGVNELKFQRSLRSVAEERAGRYCGGLRVLNSYWVGQDSIYKYFEVIMVD 136

Query: 439 PSHKAIRRDPKINWIVNAVHKHR 507
           P HKAIRRD +INWI    HKHR
Sbjct: 137 PFHKAIRRDARINWICKPTHKHR 159



 Score =  105 bits (251), Expect = 5e-23
 Identities = 45/57 (78%), Positives = 53/57 (92%)
 Frame = +2

Query: 32  MGAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQ 202
           MGAY+Y++ELY+KK SD++RFLLRVR WQYRQLT +HRA RPTRPDKARRLGY+AKQ
Sbjct: 1   MGAYKYLEELYKKKQSDLLRFLLRVRCWQYRQLTAIHRATRPTRPDKARRLGYKAKQ 57



 Score = 59.3 bits (137), Expect = 3e-09
 Identities = 26/44 (59%), Positives = 32/44 (72%)
 Frame = +3

Query: 510 MRGLTSAGRSSRGLGKGHRYSQTKGGSRRAAWLRRNTLQLRRKR 641
           +RGLT+AG  +RG+ KGH Y++  G SRRA W R NTL LRR R
Sbjct: 161 LRGLTAAGTKNRGMRKGHNYNKVIGSSRRANWKRHNTLSLRRYR 204


>SB_52883| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1434

 Score = 33.5 bits (73), Expect = 0.19
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = +1

Query: 121 PSVDSYAPRSQAHKAGQSPKT-RLPC*TRLCCIQNPCATWWPQASSAKGATYGKPKSH 291
           P  D+      AH+    P T ++PC    C  QNPC+   P   + + +TYG P+ +
Sbjct: 239 PKTDANGGMQIAHQLPYPPYTGQIPCLPSSCAPQNPCS---PPGCTPQYSTYGYPQGY 293


>SB_19195| Best HMM Match : LEA_4 (HMM E-Value=0.00053)
          Length = 1152

 Score = 32.3 bits (70), Expect = 0.43
 Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 5/80 (6%)
 Frame = +1

Query: 79  RCYAFFVA---CEGMA-VPSVDSYAPRSQAHKAGQSPKT-RLPC*TRLCCIQNPCATWWP 243
           RCY   VA   C  ++  P +D+      A +    P T ++PC    C  QNPC+   P
Sbjct: 702 RCYDINVAGINCRIISHPPKIDTTGGMQMAQQLSYPPYTGQVPCLPSSCTPQNPCS---P 758

Query: 244 QASSAKGATYGKPKSHGVNQ 303
              + + +T G P++ G  Q
Sbjct: 759 PGCTPQYSTSGYPQAPGYPQ 778


>SB_3451| Best HMM Match : HOK_GEF (HMM E-Value=9.4)
          Length = 173

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +2

Query: 89  RFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQ 202
           +F ++     YR+ T+MH     +RP  + R G+R KQ
Sbjct: 16  KFFVKRLTTPYRRRTQMHLLVSTSRPASSWRRGFRGKQ 53


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,526,111
Number of Sequences: 59808
Number of extensions: 499945
Number of successful extensions: 1169
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1048
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1168
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2022185256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)