Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10519
         (748 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88168-3|AAC24397.1|  204|Caenorhabditis elegans Ribosomal prote...   107   8e-24
AL117202-13|CAB55075.1|  580|Caenorhabditis elegans Hypothetical...    29   2.6  

>U88168-3|AAC24397.1|  204|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 15 protein.
          Length = 204

 Score =  107 bits (257), Expect = 8e-24
 Identities = 45/83 (54%), Positives = 59/83 (71%)
 Frame = +1

Query: 259 KGATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXSSYWVAQDSSYKYFEVILVD 438
           KG TYGKPK+HGVN+LK  ++ Q++AE             +SYWVA+DS+YK++EV+L+D
Sbjct: 77  KGQTYGKPKTHGVNELKNAKSKQAVAEGRAGRRLGSLRVLNSYWVAEDSTYKFYEVVLID 136

Query: 439 PSHKAIRRDPKINWIVNAVHKHR 507
           P HKAIRR+P   WI   VHKHR
Sbjct: 137 PFHKAIRRNPDTQWITKPVHKHR 159



 Score =  100 bits (239), Expect = 1e-21
 Identities = 41/57 (71%), Positives = 51/57 (89%)
 Frame = +2

Query: 32  MGAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQ 202
           MGAY+Y+QE++RKK SD +R+LLR+R W YRQL+ +HR PRPTRP+KARRLGYRAKQ
Sbjct: 1   MGAYKYMQEIWRKKQSDALRYLLRIRTWHYRQLSAVHRVPRPTRPEKARRLGYRAKQ 57



 Score = 61.3 bits (142), Expect = 7e-10
 Identities = 28/43 (65%), Positives = 32/43 (74%)
 Frame = +3

Query: 513 RGLTSAGRSSRGLGKGHRYSQTKGGSRRAAWLRRNTLQLRRKR 641
           RGLTSAGR SRGLGKG R+S T+GGS+   W R+NT    RKR
Sbjct: 162 RGLTSAGRKSRGLGKGWRFSATRGGSQAKNWKRKNTKVFHRKR 204


>AL117202-13|CAB55075.1|  580|Caenorhabditis elegans Hypothetical
           protein Y47D3A.16 protein.
          Length = 580

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
 Frame = -1

Query: 181 SSGFVRPCGPGSAVHTS---QLTVLPYPHTQQKTHNIAQFFPIQLLNISVGTH 32
           S+   RP   GS+  T       V+  PHT   T N    F + LLN+S+  H
Sbjct: 526 STTTTRPSNVGSSASTPIPLPKRVIKLPHTHTSTQNAQYSFMLLLLNVSLFFH 578


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,755,693
Number of Sequences: 27780
Number of extensions: 345070
Number of successful extensions: 891
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 834
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 891
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)