Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10519
         (748 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g17390.1 68417.m02606 60S ribosomal protein L15 (RPL15B)           105   2e-23
At4g16720.1 68417.m02526 60S ribosomal protein L15 (RPL15A)           105   2e-23
At1g67800.2 68414.m07739 copine-related low similarity to SP|Q99...    29   3.3  
At3g11170.1 68416.m01355 omega-3 fatty acid desaturase, chloropl...    28   5.7  
At4g39520.1 68417.m05588 GTP-binding protein, putative similar t...    27   10.0 
At4g17710.1 68417.m02645 homeobox-leucine zipper family protein ...    27   10.0 
At3g18050.1 68416.m02296 expressed protein                             27   10.0 

>At4g17390.1 68417.m02606 60S ribosomal protein L15 (RPL15B)
          Length = 204

 Score =  105 bits (253), Expect = 2e-23
 Identities = 45/83 (54%), Positives = 58/83 (69%)
 Frame = +1

Query: 259 KGATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXSSYWVAQDSSYKYFEVILVD 438
           KG  YGKP + GV QLK  R+ +S+AEE            +SYW+ +DS+YKY+E+ILVD
Sbjct: 77  KGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVVNSYWLNEDSTYKYYEIILVD 136

Query: 439 PSHKAIRRDPKINWIVNAVHKHR 507
           P+H A+R DP+INWI N VHKHR
Sbjct: 137 PAHNAVRNDPRINWICNPVHKHR 159



 Score = 91.1 bits (216), Expect = 7e-19
 Identities = 41/57 (71%), Positives = 47/57 (82%)
 Frame = +2

Query: 32  MGAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQ 202
           MGAY+Y+ EL+RKK SDVMRFL RVR W+YRQ   + R  RPTRPDKARRLGY+AKQ
Sbjct: 1   MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQQPSIVRLVRPTRPDKARRLGYKAKQ 57



 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 23/45 (51%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
 Frame = +3

Query: 510 MRGLTSAGRSSRGL-GKGHRYSQTKGGSRRAAWLRRNTLQLRRKR 641
           +RGLTS G+ +RGL GKGH   + +  SRRA W + N++ LRR R
Sbjct: 161 LRGLTSEGKKNRGLRGKGHNNHKNR-PSRRATWKKNNSISLRRYR 204


>At4g16720.1 68417.m02526 60S ribosomal protein L15 (RPL15A)
          Length = 204

 Score =  105 bits (253), Expect = 2e-23
 Identities = 45/83 (54%), Positives = 58/83 (69%)
 Frame = +1

Query: 259 KGATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXSSYWVAQDSSYKYFEVILVD 438
           KG  YGKP + GV QLK  R+ +S+AEE            +SYW+ +DS+YKY+E+ILVD
Sbjct: 77  KGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVVNSYWLNEDSTYKYYEIILVD 136

Query: 439 PSHKAIRRDPKINWIVNAVHKHR 507
           P+H A+R DP+INWI N VHKHR
Sbjct: 137 PAHNAVRNDPRINWICNPVHKHR 159



 Score = 91.1 bits (216), Expect = 7e-19
 Identities = 41/57 (71%), Positives = 47/57 (82%)
 Frame = +2

Query: 32  MGAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQ 202
           MGAY+Y+ EL+RKK SDVMRFL RVR W+YRQ   + R  RPTRPDKARRLGY+AKQ
Sbjct: 1   MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQQPSIVRLVRPTRPDKARRLGYKAKQ 57



 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 24/45 (53%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
 Frame = +3

Query: 510 MRGLTSAGRSSRGL-GKGHRYSQTKGGSRRAAWLRRNTLQLRRKR 641
           +RGLTS G+ +RGL GKGH   + +  SRRA W + N+L LRR R
Sbjct: 161 LRGLTSEGKKNRGLRGKGHNNHKNR-PSRRATWKKNNSLSLRRYR 204


>At1g67800.2 68414.m07739 copine-related low similarity to SP|Q99829
           Copine I {Homo sapiens}
          Length = 453

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = +3

Query: 504 SWMRGLTSAGRSSRGLGKGHRYSQTKGGSR--RAAW 605
           SWM G +S+  S RG G G RY ++  GS    +AW
Sbjct: 19  SWMGG-SSSKESPRGGGSGRRYERSVSGSSSYSSAW 53


>At3g11170.1 68416.m01355 omega-3 fatty acid desaturase, chloroplast
           (FAD7) (FADD) identical to omega-3 fatty acid
           desaturase, chloroplast precursor SP:P46310 [Arabidopsis
           thaliana (Mouse-ear cress)]; identical to Pfam profile
           PF00487: Fatty acid desaturase; identical to cDNA
           plastid fatty acid desaturase GI:809491
          Length = 446

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +1

Query: 385 YWVAQDSSYKYFEVILVDPSHKAIRRDPKINWIV 486
           YW+AQ + +    V+  D  H +   DPK+N +V
Sbjct: 147 YWLAQGTMFWALFVLGHDCGHGSFSNDPKLNSVV 180


>At4g39520.1 68417.m05588 GTP-binding protein, putative similar to
           SP|Q9Y295 Developmentally regulated GTP-binding protein
           1 (DRG 1) {Homo sapiens}; contains Pfam profiles
           PF02824: TGS domain, PF01018: GTP1/OBG family
          Length = 369

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +2

Query: 107 RVWQYRQLTRMHRAPRPTRPD 169
           ++W+Y  LTR++  P+   PD
Sbjct: 285 KIWEYLDLTRIYTKPKAMNPD 305


>At4g17710.1 68417.m02645 homeobox-leucine zipper family protein /
           lipid-binding START domain-containing protein similar to
           HD-Zip homeo domain OCL4 protein (GI:8920425) [Zea
           mays]; contains Pfam PF00046: Homeobox domain and Pfam
           PF01852: START domain
          Length = 709

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 10/24 (41%), Positives = 19/24 (79%)
 Frame = -2

Query: 522 SDHASTMLMYSIHDPVDLRIATNG 451
           +D++ ++L+YS  DPV +++A NG
Sbjct: 605 TDNSGSLLVYSTVDPVAVQLAMNG 628


>At3g18050.1 68416.m02296 expressed protein
          Length = 335

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = -3

Query: 170 CPALWAWERGAYESTDGTAIPSHATKNA*HRSVFSYTTPE 51
           CP L AW   AY +T  +   S A +N+   S  + TTPE
Sbjct: 82  CPVLGAWLYSAYSTTALSRSISAAARNS-SSSSAAVTTPE 120


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,983,122
Number of Sequences: 28952
Number of extensions: 323961
Number of successful extensions: 784
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 784
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1653386488
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)