Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10517
(518 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC17G9.07 |rps2402|rps24-2|40S ribosomal protein S24|Schizosac... 88 8e-19
SPAC17G6.06 |rps2401|rps24-1, rps24|40S ribosomal protein S24|Sc... 85 8e-18
SPCC417.06c |ppk35|mug27|serine/threonine protein kinase Ppk35|S... 28 0.96
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 26 3.9
SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces p... 25 9.0
SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces pomb... 25 9.0
SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22... 25 9.0
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi... 25 9.0
SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9 |Schizos... 25 9.0
>SPBC17G9.07 |rps2402|rps24-2|40S ribosomal protein
S24|Schizosaccharomyces pombe|chr 2|||Manual
Length = 134
Score = 87.8 bits (208), Expect = 8e-19
Identities = 44/62 (70%), Positives = 48/62 (77%)
Frame = +1
Query: 73 MSEGTATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFG 252
MSE TIRTRKFMTNRLL RKQMV D+LHPGK +SK EIREKLA+MYK + V FG
Sbjct: 1 MSEAV-TIRTRKFMTNRLLQRKQMVVDILHPGKANLSKNEIREKLAQMYKTDSECVQAFG 59
Query: 253 LR 258
LR
Sbjct: 60 LR 61
Score = 78.2 bits (184), Expect = 7e-16
Identities = 39/70 (55%), Positives = 49/70 (70%), Gaps = 1/70 (1%)
Frame = +3
Query: 228 SRCSVRIRFKTNFGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEK-KRPTRKQRKER 404
S C +T+FGGG+STGFALIYD+ + KKFEP +RL R G E ++ R+QRK+R
Sbjct: 52 SECVQAFGLRTHFGGGRSTGFALIYDSTESMKKFEPHYRLVRVGQAEPIQKVARQQRKQR 111
Query: 405 KNRMKKVRGT 434
KNR KKV GT
Sbjct: 112 KNRGKKVFGT 121
>SPAC17G6.06 |rps2401|rps24-1, rps24|40S ribosomal protein
S24|Schizosaccharomyces pombe|chr 1|||Manual
Length = 134
Score = 84.6 bits (200), Expect = 8e-18
Identities = 41/62 (66%), Positives = 46/62 (74%)
Frame = +1
Query: 73 MSEGTATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFG 252
MSE TIRTRKFMTNRLL RKQMV D+LHPGK +SK ++REKL +MYK V FG
Sbjct: 1 MSEAV-TIRTRKFMTNRLLQRKQMVVDILHPGKANISKNDLREKLGQMYKTDASAVQAFG 59
Query: 253 LR 258
LR
Sbjct: 60 LR 61
Score = 73.3 bits (172), Expect = 2e-14
Identities = 35/61 (57%), Positives = 47/61 (77%), Gaps = 1/61 (1%)
Frame = +3
Query: 255 KTNFGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEK-KRPTRKQRKERKNRMKKVRG 431
+T++GGG++TGFALIYD ++ KKFEP +RL R G E ++ R+QRK+RKNR KKV G
Sbjct: 61 RTHYGGGRTTGFALIYDDVEAMKKFEPHYRLVRVGHAEPIQKVARQQRKQRKNRGKKVFG 120
Query: 432 T 434
T
Sbjct: 121 T 121
>SPCC417.06c |ppk35|mug27|serine/threonine protein kinase
Ppk35|Schizosaccharomyces pombe|chr 3|||Manual
Length = 624
Score = 27.9 bits (59), Expect = 0.96
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +3
Query: 324 KFEPKHRLARHGLYEKKRPTRKQRKERKNRMKK 422
K+ P R G + +KR RK++ E+KN K
Sbjct: 539 KYRPNARKPLVGRHREKRQLRKEKPEKKNNSTK 571
>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1828
Score = 25.8 bits (54), Expect = 3.9
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = -3
Query: 105 ASANSRCSFTHFELFSII 52
+S SRCSFT FE+ SI+
Sbjct: 777 SSVISRCSFTDFEINSIL 794
>SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 24.6 bits (51), Expect = 9.0
Identities = 9/35 (25%), Positives = 21/35 (60%)
Frame = +3
Query: 318 AKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKK 422
+KK + + + +K +K++KE+K+++KK
Sbjct: 125 SKKVKVRKTSGKESSKREKSKKKKEKKEKKDKLKK 159
>SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 440
Score = 24.6 bits (51), Expect = 9.0
Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 5/39 (12%)
Frame = +3
Query: 324 KFEPKHRLARHGLYEKKRPT-----RKQRKERKNRMKKV 425
+F KH L RHG EKKR R+Q + R KKV
Sbjct: 58 EFGTKH-LRRHGRIEKKRRNWKGLFRRQSNWKDGRCKKV 95
>SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 332
Score = 24.6 bits (51), Expect = 9.0
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -1
Query: 200 SRISVLLTVGFPGCKTSQTICLRANNL 120
SRI + ++G K Q++CLR N +
Sbjct: 48 SRIQSMASLGLERFKNLQSLCLRQNQI 74
>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 448
Score = 24.6 bits (51), Expect = 9.0
Identities = 8/23 (34%), Positives = 17/23 (73%)
Frame = +3
Query: 366 EKKRPTRKQRKERKNRMKKVRGT 434
E+ +P ++ +E +NR+ ++RGT
Sbjct: 90 ERLKPQDERTQEERNRVDEIRGT 112
>SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 591
Score = 24.6 bits (51), Expect = 9.0
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = +3
Query: 81 RNSDYSHSQVHDQQIVGAQADGLRCFTSRKTNRQQDRDP 197
+NS++S + +Q + ADG R + + Q+ R+P
Sbjct: 449 KNSEFSETNAMNQTSNHSHADGQRYYRPEQDRSQRLRNP 487
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,126,965
Number of Sequences: 5004
Number of extensions: 42950
Number of successful extensions: 126
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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