Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10517
(518 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0153 - 7258002-7258034,7258137-7258223,7258991-7259161,725... 97 7e-21
01_06_0550 - 30151494-30151526,30151620-30151706,30152458-301526... 96 2e-20
06_03_0440 + 20815528-20815653,20815742-20815912,20816501-208165... 76 6e-16
02_05_0473 + 29319824-29322511,29322659-29322820,29324133-293242... 32 0.24
05_06_0270 - 26830231-26830394,26830489-26830681,26830853-268310... 31 0.42
01_01_0502 - 3688940-3689149,3689180-3689251,3690028-3690064,369... 30 1.3
01_06_0355 + 28657833-28660665,28660762-28661126 29 3.0
09_03_0036 + 11772940-11773171,11774995-11775104 28 5.2
01_06_1355 + 36610390-36610479,36611906-36612063,36612144-366125... 28 5.2
01_05_0740 - 24809951-24810394,24810622-24810700,24811651-248118... 27 6.8
05_07_0323 + 29260608-29260836,29262242-29262513,29263349-292634... 27 9.0
>02_02_0153 -
7258002-7258034,7258137-7258223,7258991-7259161,
7259261-7259386
Length = 138
Score = 97.1 bits (231), Expect = 7e-21
Identities = 44/68 (64%), Positives = 52/68 (76%)
Frame = +3
Query: 228 SRCSVRIRFKTNFGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERK 407
S C +F+T+FGGGKSTGF LIYD LD AKK+EPK+RL R+GL K +RKQ KERK
Sbjct: 58 SNCIFVFKFRTHFGGGKSTGFGLIYDNLDAAKKYEPKYRLIRNGLATKVEKSRKQMKERK 117
Query: 408 NRMKKVRG 431
NR KK+RG
Sbjct: 118 NRAKKIRG 125
Score = 75.8 bits (178), Expect = 2e-14
Identities = 35/57 (61%), Positives = 46/57 (80%), Gaps = 1/57 (1%)
Frame = +1
Query: 91 TIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKV-TPDVVFVFGLR 258
T+RTRKFMTNRLL+RKQ V +VLHPG+ VSK +++EKLAK+Y+V + +FVF R
Sbjct: 11 TLRTRKFMTNRLLSRKQFVLEVLHPGRANVSKADLKEKLAKLYEVKDSNCIFVFKFR 67
>01_06_0550 -
30151494-30151526,30151620-30151706,30152458-30152628,
30152716-30152757,30152856-30152939
Length = 138
Score = 95.9 bits (228), Expect = 2e-20
Identities = 43/68 (63%), Positives = 52/68 (76%)
Frame = +3
Query: 228 SRCSVRIRFKTNFGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERK 407
+ C +F+T+FGGGKSTGF LIYD LD AKK+EPK+RL R+GL K +RKQ KERK
Sbjct: 58 ANCIFVFKFRTHFGGGKSTGFGLIYDNLDAAKKYEPKYRLIRNGLATKVEKSRKQMKERK 117
Query: 408 NRMKKVRG 431
NR KK+RG
Sbjct: 118 NRAKKIRG 125
Score = 79.4 bits (187), Expect = 2e-15
Identities = 36/57 (63%), Positives = 47/57 (82%), Gaps = 1/57 (1%)
Frame = +1
Query: 91 TIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKV-TPDVVFVFGLR 258
T+RTRKFMTNRLL+RKQ V +V+HPG+P VSK E++EKLAK+Y+V + +FVF R
Sbjct: 11 TLRTRKFMTNRLLSRKQFVLEVIHPGRPNVSKAELKEKLAKLYEVKDANCIFVFKFR 67
>06_03_0440 +
20815528-20815653,20815742-20815912,20816501-20816584,
20818831-20818917,20819044-20819076
Length = 166
Score = 75.8 bits (178), Expect = 2e-14
Identities = 35/57 (61%), Positives = 46/57 (80%), Gaps = 1/57 (1%)
Frame = +1
Query: 91 TIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKV-TPDVVFVFGLR 258
T+RTRKFMTNRLL+RKQ V +VLHPG+ VSK +++EKLAK+Y+V + +FVF R
Sbjct: 11 TLRTRKFMTNRLLSRKQFVLEVLHPGRANVSKADLKEKLAKLYEVKDSNCIFVFKFR 67
Score = 65.3 bits (152), Expect(2) = 6e-16
Identities = 28/42 (66%), Positives = 33/42 (78%)
Frame = +3
Query: 228 SRCSVRIRFKTNFGGGKSTGFALIYDTLDLAKKFEPKHRLAR 353
S C +F+T+FGGGKSTGF LIYD LD AKK+EPK+RL R
Sbjct: 58 SNCIFVFKFRTHFGGGKSTGFGLIYDNLDAAKKYEPKYRLIR 99
Score = 35.9 bits (79), Expect(2) = 6e-16
Identities = 16/26 (61%), Positives = 19/26 (73%)
Frame = +3
Query: 354 HGLYEKKRPTRKQRKERKNRMKKVRG 431
+GL K +RKQ KERKNR KK+RG
Sbjct: 128 NGLATKVEKSRKQMKERKNRAKKIRG 153
>02_05_0473 +
29319824-29322511,29322659-29322820,29324133-29324249,
29324360-29324469,29324504-29324540,29324696-29324862,
29325002-29325089,29325163-29325270
Length = 1158
Score = 32.3 bits (70), Expect = 0.24
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = +1
Query: 151 DVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFGLRQTSEVASQLD 288
D+L + KT +R L Y + PD +FV + S+V Q+D
Sbjct: 724 DILSIARSVCCKTSLRAALKAKYGILPDNIFVKAAKLCSDVGIQID 769
>05_06_0270 -
26830231-26830394,26830489-26830681,26830853-26831069,
26831864-26831990,26831998-26832121
Length = 274
Score = 31.5 bits (68), Expect = 0.42
Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Frame = -1
Query: 329 ELLGQIECVVDQSESS*-LATSEVCLKPNTNTTSGVTLYILASFSRISVLLTVGFPGC 159
E G + V S+S +EVC P +N + L +RI LL VGF GC
Sbjct: 174 ESYGHVNFVASSSDSKEEFFFAEVCYDPKSNGLVPTCMVSLEENNRIGGLLGVGFVGC 231
>01_01_0502 -
3688940-3689149,3689180-3689251,3690028-3690064,
3691224-3691705
Length = 266
Score = 29.9 bits (64), Expect = 1.3
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +2
Query: 284 WIRFDLRHTRSGQEVRAQAQVSPPRPVREEEAHA 385
W R +R + G E AQ+ PPRPV + +HA
Sbjct: 155 WSRL-VRTSEHGDEQLTGAQLRPPRPVEADASHA 187
>01_06_0355 + 28657833-28660665,28660762-28661126
Length = 1065
Score = 28.7 bits (61), Expect = 3.0
Identities = 17/60 (28%), Positives = 29/60 (48%)
Frame = -1
Query: 251 PNTNTTSGVTLYILASFSRISVLLTVGFPGCKTSQTICLRANNLLVMNLRVRIVAVPSLI 72
PN S +TL L + + L +GFP CK + + + LL ++V +PS++
Sbjct: 670 PNGGVFSNITLQSLRGNTALCGLPRLGFPHCKNDHPLQGKKSRLL------KVVLIPSIL 723
>09_03_0036 + 11772940-11773171,11774995-11775104
Length = 113
Score = 27.9 bits (59), Expect = 5.2
Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Frame = +3
Query: 132 AQADGLRCFTSRKTNRQQDRDP*EARQNVQG--YSRCSVRIRFKTNFGGGKSTGFALIYD 305
A+A G + R+ R + R ++ + YSRC+ KT F GG++ F L
Sbjct: 16 ARATGGQNLMDRRGKRHEGRRERRGKERGRNLHYSRCAADTTRKTIFAGGQNE-FLL--- 71
Query: 306 TLDLAKKFEPKHRLAR 353
T + PKH LA+
Sbjct: 72 TANATASGVPKHLLAK 87
>01_06_1355 +
36610390-36610479,36611906-36612063,36612144-36612523,
36612600-36613583,36614228-36614292,36614946-36615024,
36615480-36615529,36616595-36616781,36617922-36617957,
36619226-36619348,36619466-36620386,36620506-36620636
Length = 1067
Score = 27.9 bits (59), Expect = 5.2
Identities = 12/43 (27%), Positives = 25/43 (58%)
Frame = -1
Query: 200 SRISVLLTVGFPGCKTSQTICLRANNLLVMNLRVRIVAVPSLI 72
+R+ V + +GF C+ QT C R+ +++ N+ A+P+ +
Sbjct: 364 TRMLVTVGLGFSSCQPEQTQCNRSAPVVLANMNNVSFALPNTV 406
>01_05_0740 - 24809951-24810394,24810622-24810700,24811651-24811809,
24812083-24812246,24812436-24812624,24813151-24813408,
24813463-24813951,24814062-24814262,24814368-24814639,
24814661-24814685,24814776-24814937,24815065-24815104,
24815244-24815353,24815812-24815898,24816013-24816507
Length = 1057
Score = 27.5 bits (58), Expect = 6.8
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +3
Query: 357 GLYEKKRPTRKQRKERKNRMKK 422
G+YE++R R+Q KER+ + K
Sbjct: 999 GVYERERNMRQQEKERRKQQSK 1020
>05_07_0323 +
29260608-29260836,29262242-29262513,29263349-29263487,
29263581-29263714,29263847-29263970,29264364-29264773
Length = 435
Score = 27.1 bits (57), Expect = 9.0
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -2
Query: 334 GSNFLARSSVS*IKANPVDLPPPKFVLNRIRTLHRE 227
G+ LAR++ S + NP D P V++ + TLH +
Sbjct: 337 GAQILARTARSCTRQNPRDRPLMSEVVHTLETLHTD 372
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,114,987
Number of Sequences: 37544
Number of extensions: 292726
Number of successful extensions: 840
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 806
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 836
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1130733700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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