Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10517
         (518 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g04920.1 68416.m00534 40S ribosomal protein S24 (RPS24A) simi...    91   4e-19
At5g28060.1 68418.m03382 40S ribosomal protein S24 (RPS24B) 40S ...    89   1e-18
At5g23040.2 68418.m02694 expressed protein similar to unknown pr...    29   1.4  
At5g23040.1 68418.m02693 expressed protein similar to unknown pr...    29   1.4  
At5g26850.1 68418.m03203 expressed protein                             28   4.3  
At5g52700.1 68418.m06542 heavy-metal-associated domain-containin...    27   5.7  

>At3g04920.1 68416.m00534 40S ribosomal protein S24 (RPS24A) similar
           to ribosomal protein S19 GB:445612 [Solanum tuberosum]
           and similar to ribosomal protein S24 GB:4506703 [Homo
           sapiens]
          Length = 133

 Score = 91.1 bits (216), Expect = 4e-19
 Identities = 41/61 (67%), Positives = 51/61 (83%)
 Frame = +3

Query: 249 RFKTNFGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVR 428
           +F+T+FGGGKS+GF LIYDT++ AKKFEPK+RL R+GL  K   +RKQ KERKNR KK+R
Sbjct: 61  KFRTHFGGGKSSGFGLIYDTVESAKKFEPKYRLIRNGLDTKIEKSRKQIKERKNRAKKIR 120

Query: 429 G 431
           G
Sbjct: 121 G 121



 Score = 86.6 bits (205), Expect = 9e-18
 Identities = 41/63 (65%), Positives = 50/63 (79%), Gaps = 1/63 (1%)
 Frame = +1

Query: 73  MSEGTATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKV-TPDVVFVF 249
           M+E   TIRTRKFMTNRLL+RKQ V DVLHPG+  VSK E++EKLA+MY+V  P+ +FVF
Sbjct: 1   MAEKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVF 60

Query: 250 GLR 258
             R
Sbjct: 61  KFR 63


>At5g28060.1 68418.m03382 40S ribosomal protein S24 (RPS24B) 40S
           ribosomal protein S19, Cyanophora paradoxa,
           EMBL:CPA245654
          Length = 133

 Score = 89.4 bits (212), Expect = 1e-18
 Identities = 40/61 (65%), Positives = 51/61 (83%)
 Frame = +3

Query: 249 RFKTNFGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVR 428
           +F+T+FGGGKS+G+ LIYDT++ AKKFEPK+RL R+GL  K   +RKQ KERKNR KK+R
Sbjct: 61  KFRTHFGGGKSSGYGLIYDTVENAKKFEPKYRLIRNGLDTKIEKSRKQIKERKNRAKKIR 120

Query: 429 G 431
           G
Sbjct: 121 G 121



 Score = 83.8 bits (198), Expect = 6e-17
 Identities = 40/63 (63%), Positives = 48/63 (76%), Gaps = 1/63 (1%)
 Frame = +1

Query: 73  MSEGTATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKV-TPDVVFVF 249
           M+E   TIRTR FMTNRLLARKQ V DVLHPG+  VSK E++EKLA+MY+V  P+ +F F
Sbjct: 1   MAEKAVTIRTRNFMTNRLLARKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFCF 60

Query: 250 GLR 258
             R
Sbjct: 61  KFR 63


>At5g23040.2 68418.m02694 expressed protein similar to unknown
           protein (emb|CAB62636.1)
          Length = 258

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = -3

Query: 129 QQSVGHELASANSRCSFTHFELFSIIRRLHARVSAKTREKKK 4
           QQ  GHE +  +   +F    + S IRR   +++ K++ KKK
Sbjct: 93  QQYAGHERSEESIEGAFEKLLMSSFIRRKKTKINLKSKLKKK 134


>At5g23040.1 68418.m02693 expressed protein similar to unknown
           protein (emb|CAB62636.1)
          Length = 258

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = -3

Query: 129 QQSVGHELASANSRCSFTHFELFSIIRRLHARVSAKTREKKK 4
           QQ  GHE +  +   +F    + S IRR   +++ K++ KKK
Sbjct: 93  QQYAGHERSEESIEGAFEKLLMSSFIRRKKTKINLKSKLKKK 134


>At5g26850.1 68418.m03203 expressed protein
          Length = 919

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = +1

Query: 112 MTNRLLARKQMVCDVLHPGKPTVSKTEIRE-KLAKMYKVTPDVVFVFGLRQTSE 270
           M +++     ++ D++    P +SK E  + K+  + + TPD  F+FG R   E
Sbjct: 702 MRSKVELSNTIITDIVAKNLPKLSKLEEADVKMQILEQFTPDDAFMFGSRPNIE 755


>At5g52700.1 68418.m06542 heavy-metal-associated domain-containing
           protein   contains Pfam profile PF00403:
           Heavy-metal-associated domain
          Length = 370

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = +2

Query: 281 NWIRFDLRHTRSGQEVRAQAQVSPPRPVR-EEEAHAQTA*RT*EQNEEGPRYQE 439
           N   F++++  S   V A+ +V PP PVR     +A    +   Q  E P Y++
Sbjct: 202 NGTNFNMKNALSSFRVPARVRVPPPPPVRPASPVYAAGRGKKFNQGNEFPTYKQ 255


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,239,440
Number of Sequences: 28952
Number of extensions: 229470
Number of successful extensions: 653
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 631
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 652
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 947539968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)