Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10515
         (730 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces pomb...    36   0.008
SPBC2G2.12 |||histidine-tRNA ligase|Schizosaccharomyces pombe|ch...    28   1.2  
SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr...    28   1.6  
SPCC825.03c |psy1|sso1|SNARE Psy1|Schizosaccharomyces pombe|chr ...    27   2.1  
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo...    26   4.8  
SPBC3D6.04c |mad1||mitotic spindle checkpoint protein Mad1|Schiz...    25   8.4  
SPBC32F12.02 |rec14||recombination protein Rec14|Schizosaccharom...    25   8.4  
SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomy...    25   8.4  

>SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 782

 Score = 35.5 bits (78), Expect = 0.008
 Identities = 15/31 (48%), Positives = 21/31 (67%)
 Frame = +3

Query: 75  GHVIGKPEPLFVKIEQERLEELRARYAGTQS 167
           GH IG+PE LF +I++   EE R++Y G  S
Sbjct: 751 GHRIGEPEYLFTRIDESMEEEWRSKYGGNGS 781


>SPBC2G2.12 |||histidine-tRNA ligase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 538

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = +1

Query: 559 AGDVASLEIAIAEQGDKVRKLKASAKDKAVWQPEVNVLLDLKNV 690
           A  +  +   I  QG+ VR LK+    K     EV  LL LKN+
Sbjct: 2   ADSLVDINERITSQGNLVRSLKSQGASKEDIDKEVAKLLQLKNL 45


>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 780

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = -2

Query: 501 FSSNSFSTSGCQTDLSFVVDFNFLTASPCSAIAFSKLATSP 379
           FSSNSFS +  +   S   D    + SP +A  F K +  P
Sbjct: 44  FSSNSFSPTELKARTSATFDVRSASTSPINASDFHKYSHDP 84


>SPCC825.03c |psy1|sso1|SNARE Psy1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 284

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 14/24 (58%), Positives = 19/24 (79%), Gaps = 1/24 (4%)
 Frame = +2

Query: 98  ALIREDRAGEARGAESEVR-RHAE 166
           AL+R +R+GEAR A  EV+ RHA+
Sbjct: 167 ALLRSNRSGEARTALREVQERHAD 190


>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1388

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
 Frame = +3

Query: 273  ISQSGN--PKSRSC*S*RNGSPKLRSKLKRDHQRTRPLAMWPA*RKLLLSRAMQLEN*SR 446
            IS +G   PK ++    ++G P ++S  K +     P       RK   S+  ++E  SR
Sbjct: 1213 ISTNGKTQPKKQTANRRQSGKPNVKSAQKIESATRTPSPAISESRKKPSSKDTKIETPSR 1272

Query: 447  QRKISQSGNP 476
            ++  SQ+ +P
Sbjct: 1273 EQSRSQTASP 1282


>SPBC3D6.04c |mad1||mitotic spindle checkpoint protein
           Mad1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 689

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 14/53 (26%), Positives = 29/53 (54%)
 Frame = +3

Query: 120 QERLEELRARYAGTQSQRADKKNSKTLDIAELEKSIAEQGDAVRK*SRQRKIS 278
           Q+ +EE+R     TQ +  +  ++K  +IAEL+  I +   A+ + + +  +S
Sbjct: 118 QKEIEEVRNEKEATQVKIHELLDAKWKEIAELKTQIEKNDQALSEKNHEVMVS 170


>SPBC32F12.02 |rec14||recombination protein
           Rec14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 302

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +1

Query: 634 KDKAVWQPEVNVLLDLKNVSKH 699
           +D  VW PE N   DL N ++H
Sbjct: 81  QDVYVWNPETNEFRDLGNNAQH 102


>SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1010

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 129 LEELRARYAGTQSQRADKKNSKTLDIAEL 215
           L+ L   YAG      D  NS+T+D+AE+
Sbjct: 173 LKSLLVSYAGIVVMLPDTFNSETIDLAEV 201


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,361,229
Number of Sequences: 5004
Number of extensions: 38665
Number of successful extensions: 116
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)