Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10515
(730 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_50408| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_8676| Best HMM Match : Peptidase_M18 (HMM E-Value=0) 40 0.002
SB_7216| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.31
SB_9709| Best HMM Match : WHEP-TRS (HMM E-Value=0.0041) 32 0.41
SB_14911| Best HMM Match : Amelogenin (HMM E-Value=1.7) 30 2.2
SB_16234| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.1
SB_30717| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.56) 28 6.7
SB_20226| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_4371| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0027) 28 6.7
SB_35206| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.012) 28 8.9
SB_523| Best HMM Match : zf-C2H2 (HMM E-Value=4.9) 28 8.9
SB_27093| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9
SB_16964| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9
SB_2550| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9
>SB_50408| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 550
Score = 39.9 bits (89), Expect = 0.002
Identities = 19/52 (36%), Positives = 30/52 (57%)
Frame = +1
Query: 529 AETRPPANQAAGDVASLEIAIAEQGDKVRKLKASAKDKAVWQPEVNVLLDLK 684
+ T P + + +L+ + +QG+KVR LK + +KAV EV LL+LK
Sbjct: 471 SSTPAPGAASPATIEALQAEVTQQGEKVRSLKTNKAEKAVIDAEVTRLLELK 522
Score = 32.3 bits (70), Expect = 0.41
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = +3
Query: 90 KPEPLFVKIEQERLEELRARYAGTQSQRADKKNS 191
KP+PLF KI+ E+L+A+YAG ++ K ++
Sbjct: 435 KPKPLFQKIDPAVCEKLKAKYAGKKAPSKAKPSA 468
>SB_8676| Best HMM Match : Peptidase_M18 (HMM E-Value=0)
Length = 1161
Score = 39.9 bits (89), Expect = 0.002
Identities = 25/52 (48%), Positives = 29/52 (55%)
Frame = +1
Query: 529 AETRPPANQAAGDVASLEIAIAEQGDKVRKLKASAKDKAVWQPEVNVLLDLK 684
A+ +P A+ AA V L I +QGDKVR LK DK EV VLL LK
Sbjct: 417 AQAKPLADPAA--VEKLMGEITQQGDKVRTLKTGGADKGTVDAEVAVLLKLK 466
>SB_7216| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1400
Score = 32.7 bits (71), Expect = 0.31
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = +3
Query: 120 QERLEELRARYAGTQSQRADKKNSKTL--DIAELEKSIAEQGDAVR 251
+ER++EL + A QSQ K S T D +LEK++AE R
Sbjct: 818 EERIQELELQIAAMQSQDLPKNESSTTESDSEKLEKALAEMASRAR 863
>SB_9709| Best HMM Match : WHEP-TRS (HMM E-Value=0.0041)
Length = 83
Score = 32.3 bits (70), Expect = 0.41
Identities = 17/40 (42%), Positives = 24/40 (60%)
Frame = +1
Query: 523 KQAETRPPANQAAGDVASLEIAIAEQGDKVRKLKASAKDK 642
KQAE+ P ++AA ++ + I +QGDKVR LK K
Sbjct: 47 KQAESAPALSEAAQELLA---TITQQGDKVRSLKTQGAHK 83
>SB_14911| Best HMM Match : Amelogenin (HMM E-Value=1.7)
Length = 326
Score = 29.9 bits (64), Expect = 2.2
Identities = 18/52 (34%), Positives = 25/52 (48%)
Frame = +2
Query: 20 RKAPTEPREPQAPPVPAAGSRHRETGALIREDRAGEARGAESEVRRHAEPEG 175
R PT R+P +PPV +G+R R T R + A+S R + EG
Sbjct: 197 RSDPTRYRQPMSPPVRDSGNRDRVTDPYPR--HSSPHHRAQSSFERGSGSEG 246
>SB_16234| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1150
Score = 28.7 bits (61), Expect = 5.1
Identities = 17/42 (40%), Positives = 23/42 (54%)
Frame = +1
Query: 547 ANQAAGDVASLEIAIAEQGDKVRKLKASAKDKAVWQPEVNVL 672
A + G ++S E EQ K RKL A+ KAVW P +V+
Sbjct: 788 AEELGGSMSSKE----EQKQKKRKLVKVARSKAVWVPPHSVM 825
>SB_30717| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.56)
Length = 499
Score = 28.3 bits (60), Expect = 6.7
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -1
Query: 268 RCRLHFLTASPCSAIDFSNSAISNVLEF 185
R R LTA CS+ +SNS I+ V+ F
Sbjct: 444 RTRTQTLTARACSSRPYSNSPITTVMSF 471
>SB_20226| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 613
Score = 28.3 bits (60), Expect = 6.7
Identities = 19/50 (38%), Positives = 30/50 (60%)
Frame = +1
Query: 568 VASLEIAIAEQGDKVRKLKASAKDKAVWQPEVNVLLDLKNVSKHCKSRNK 717
+++L ++ EQGD VRKLK +DKA PE +V + +K + K+ K
Sbjct: 10 LSNLRKSVKEQGDLVRKLK---EDKA---PENDVEIAIKELKARKKALEK 53
Score = 27.9 bits (59), Expect = 8.9
Identities = 11/19 (57%), Positives = 16/19 (84%)
Frame = +2
Query: 386 VASLEKAIAEQGDAVRKLK 442
+++L K++ EQGD VRKLK
Sbjct: 10 LSNLRKSVKEQGDLVRKLK 28
>SB_4371| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0027)
Length = 674
Score = 28.3 bits (60), Expect = 6.7
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +3
Query: 111 KIEQERLE-ELRARYAGTQSQRADKKNSKTLDIAELEKSIAEQGDAVRK*SRQRK 272
K+E +LE ELR + + K+N K+ I +L+ I + + + + RQ K
Sbjct: 402 KLEVSKLEKELRTAMQDLDNSKVQKENEKSETILKLKADIQAKDEQIEELERQLK 456
>SB_35206| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.012)
Length = 1148
Score = 27.9 bits (59), Expect = 8.9
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
Frame = +2
Query: 35 EPREPQAPPVPAAGSRHRETGA-LIREDR-----AGEARGAESEVRRHAEPE 172
+PR P P +A +RH GA ++E R + + + + VR H +PE
Sbjct: 925 QPRPPPKPRAESAKTRHHSPGASRLQEKRDSASLSAKLAASRNHVRDHVQPE 976
>SB_523| Best HMM Match : zf-C2H2 (HMM E-Value=4.9)
Length = 149
Score = 27.9 bits (59), Expect = 8.9
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
Frame = +2
Query: 35 EPREPQAPPVPAAGSRHRETGA-LIREDR-----AGEARGAESEVRRHAEPE 172
+PR P P +A +RH GA ++E R + + + + VR H +PE
Sbjct: 40 QPRPPPKPRAESAKTRHHSPGASRLQEKRDLASLSAKLAASRNHVRDHVQPE 91
>SB_27093| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 683
Score = 27.9 bits (59), Expect = 8.9
Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 9/72 (12%)
Frame = +3
Query: 114 IEQERLEELRARYAGTQSQRADKKNSKTL------DIAELEKSIAEQGDAVRK*S---RQ 266
++QE+L++ A+ Q +RADK++ + I ++ +E A S R+
Sbjct: 134 VDQEKLKKAEAKLKAKQERRADKEDKADVVPVYVHSITSAKQCFSEMDGATASQSTNRRE 193
Query: 267 RKISQSGNPKSR 302
+K+ SG KS+
Sbjct: 194 QKMESSGTNKSQ 205
>SB_16964| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 229
Score = 27.9 bits (59), Expect = 8.9
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
Frame = +2
Query: 35 EPREPQAPPVPAAGSRHRETGA-LIREDR-----AGEARGAESEVRRHAEPE 172
+PR P P +A +RH GA ++E R + + + + VR H +PE
Sbjct: 120 QPRPPPKPRAESAKTRHHSPGASRLQEKRDSASLSAKLAASRNHVRDHVQPE 171
>SB_2550| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 929
Score = 27.9 bits (59), Expect = 8.9
Identities = 36/133 (27%), Positives = 57/133 (42%), Gaps = 3/133 (2%)
Frame = +3
Query: 87 GKPEPLF-VKIEQERLEELR-ARYAGTQSQRADKKNSKTLDIAELEKSIAEQGDAVRK*S 260
GK L+ + + RL L A + R +K+LD++E+ + E+G +RK
Sbjct: 659 GKGVDLYHMLFDNTRLHALNYTNMASKGNPRIKAYKNKSLDVSEMRRRREEEGVQLRKAK 718
Query: 261 RQRKISQSGNPKSRSC*S*RNGSPKLRSKLKRDHQRTRPLAMWPA*RKLLLSRAMQLEN* 440
R+ ++ + N + S GS +L L D+ PL + MQL
Sbjct: 719 REEQMFKRRNVEVTRTSS--TGS-ELEELLTSDYMAEGPLFQDMVQAIISDDVEMQLAAT 775
Query: 441 SRQRKI-SQSGNP 476
R RKI S+ NP
Sbjct: 776 QRFRKILSKEPNP 788
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,304,764
Number of Sequences: 59808
Number of extensions: 298312
Number of successful extensions: 1138
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1037
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1137
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1949964354
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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