Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10515
         (730 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73427-5|CAA97803.1|  917|Caenorhabditis elegans Hypothetical pr...    39   0.003
U41990-2|AAA83339.2| 1963|Caenorhabditis elegans Non-muscle myos...    30   1.5  
U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy ch...    29   4.5  
L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy ch...    29   4.5  

>Z73427-5|CAA97803.1|  917|Caenorhabditis elegans Hypothetical
           protein F58B3.5 protein.
          Length = 917

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 20/56 (35%), Positives = 31/56 (55%)
 Frame = +3

Query: 75  GHVIGKPEPLFVKIEQERLEELRARYAGTQSQRADKKNSKTLDIAELEKSIAEQGD 242
           GH IG+P PLF K++  ++ E +A++ G  SQ A     KT +  + +K  A   D
Sbjct: 564 GHKIGQPSPLFQKLDPAQIAEFKAKFGG--SQDAQSSAPKTAEKPKQQKKQAPTKD 617


>U41990-2|AAA83339.2| 1963|Caenorhabditis elegans Non-muscle myosin
            protein 1 protein.
          Length = 1963

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
 Frame = +3

Query: 108  VKIEQERLEELRARYAGTQSQRADKKNSKTLDIAELEKSI-AEQGDAVRK*SRQRK 272
            +++E + LEELRA+  G  S+   +  +K   IA+LE+ +  EQ +      +QRK
Sbjct: 1703 LELENDELEELRAKGGGISSEEKRRLEAK---IAQLEEELEEEQSNCELAIDKQRK 1755


>U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy chain
            protein 1 protein.
          Length = 4568

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
 Frame = +3

Query: 111  KIEQERL--EELRARYAGTQSQRADKKNSKTLDIAELEKSIAEQGDAVR 251
            K E+E+   E+L+   A    Q A+KK     D+A++E ++AE   AV+
Sbjct: 3192 KAEEEKKFSEQLQKELAEQLKQMAEKKTFVENDLAQVEPAVAEAQTAVQ 3240


>L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy chain
            protein.
          Length = 4568

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
 Frame = +3

Query: 111  KIEQERL--EELRARYAGTQSQRADKKNSKTLDIAELEKSIAEQGDAVR 251
            K E+E+   E+L+   A    Q A+KK     D+A++E ++AE   AV+
Sbjct: 3192 KAEEEKKFSEQLQKELAEQLKQMAEKKTFVENDLAQVEPAVAEAQTAVQ 3240


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,310,313
Number of Sequences: 27780
Number of extensions: 224342
Number of successful extensions: 855
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 787
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 855
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)