Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10515
         (730 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    23   2.9  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    23   2.9  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    22   5.2  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    22   5.2  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      21   9.0  

>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -1

Query: 682 SDRAIHLLQAATRPCLLLR 626
           S+ ++H ++  T PCLL R
Sbjct: 614 SEESVHSMELRTLPCLLPR 632


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -1

Query: 682 SDRAIHLLQAATRPCLLLR 626
           S+ ++H ++  T PCLL R
Sbjct: 582 SEESVHSMELRTLPCLLPR 600


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = -3

Query: 698 CLETFFRSSNTFTSGCHTA 642
           CL+T+  +++T+ +  HTA
Sbjct: 289 CLQTYLINASTYLNEVHTA 307


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = -3

Query: 698 CLETFFRSSNTFTSGCHTA 642
           CL+T+  +++T+ +  HTA
Sbjct: 327 CLQTYLINASTYLNEVHTA 345


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -2

Query: 432 LTASPCSAIAFSKLATSPAAW 370
           +T+S CS +A  KL+ + + W
Sbjct: 336 ITSSSCSYMAHEKLSYAFSVW 356


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,632
Number of Sequences: 438
Number of extensions: 2599
Number of successful extensions: 16
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22657590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)