Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10515
         (730 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g13780.1 68417.m02137 methionine--tRNA ligase, putative / met...    38   0.009
At3g60500.2 68416.m06767 3' exoribonuclease family protein simil...    31   0.59 
At3g60500.1 68416.m06766 3' exoribonuclease family protein simil...    31   0.59 
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)...    31   1.0  
At2g31900.1 68415.m03897 myosin family protein contains Pfam pro...    30   1.4  
At3g18940.1 68416.m02404 clast3-related contains Prosite PS00626...    29   2.4  
At2g34357.1 68415.m04206 expressed protein                             29   3.2  
At5g56680.1 68418.m07075 asparaginyl-tRNA synthetase 1, cytoplas...    29   4.2  
At1g20610.1 68414.m02575 cyclin, putative similar to G2/mitotic-...    29   4.2  
At3g12170.1 68416.m01518 DNAJ heat shock N-terminal domain-conta...    27   9.6  

>At4g13780.1 68417.m02137 methionine--tRNA ligase, putative /
           methionyl-tRNA synthetase, putative / MetRS, putative
           similar to methionyl-tRNA synthetase [Oryza sativa]
           GI:4091008; contains Pfam profiles PF00133: tRNA
           synthetases class I (I, L, M and V), PF01588: Putative
           tRNA binding domain
          Length = 797

 Score = 37.5 bits (83), Expect = 0.009
 Identities = 15/41 (36%), Positives = 25/41 (60%)
 Frame = +3

Query: 78  HVIGKPEPLFVKIEQERLEELRARYAGTQSQRADKKNSKTL 200
           H IG P+PLF ++E + +   R ++AG+QS R  +  +  L
Sbjct: 559 HRIGTPQPLFKELENDEVARYREKFAGSQSDRRARDEAANL 599


>At3g60500.2 68416.m06767 3' exoribonuclease family protein similar
           to SP|Q06265 Exosome complex exonuclease RRP45 [Homo
           sapiens]; contains Pfam profiles  PF01138: 3'
           exoribonuclease family, domain 1, PF03725: 3'
           exoribonuclease family, domain 2
          Length = 438

 Score = 31.5 bits (68), Expect = 0.59
 Identities = 14/34 (41%), Positives = 23/34 (67%)
 Frame = +3

Query: 189 SKTLDIAELEKSIAEQGDAVRK*SRQRKISQSGN 290
           S+ +D+  L+ S+A +GD V K S  +K++ SGN
Sbjct: 360 SEAMDVDSLKVSLASRGDPVTKSSSTKKMNGSGN 393


>At3g60500.1 68416.m06766 3' exoribonuclease family protein similar
           to SP|Q06265 Exosome complex exonuclease RRP45 [Homo
           sapiens]; contains Pfam profiles  PF01138: 3'
           exoribonuclease family, domain 1, PF03725: 3'
           exoribonuclease family, domain 2
          Length = 438

 Score = 31.5 bits (68), Expect = 0.59
 Identities = 14/34 (41%), Positives = 23/34 (67%)
 Frame = +3

Query: 189 SKTLDIAELEKSIAEQGDAVRK*SRQRKISQSGN 290
           S+ +D+  L+ S+A +GD V K S  +K++ SGN
Sbjct: 360 SEAMDVDSLKVSLASRGDPVTKSSSTKKMNGSGN 393


>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
           non-consensus TA donor splice site at exon 2,
           polyadenylate-binding protein - Triticum aestivum
           (common wheat),PIR:T06979
          Length = 443

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +3

Query: 117 EQERLEELRARYAGTQSQRADKKNSKTLDIAELEKSIAEQ 236
           + ER  ELR RY     + ADK  S  L +  L+ SI+++
Sbjct: 107 KSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDE 146


>At2g31900.1 68415.m03897 myosin family protein contains Pfam
            profiles: PF00063 myosin head (motor domain), PF01843 DIL
            domain, PF00612 IQ calmodulin-binding motif, PF02736
            myosin N-terminal SH3-like domain
          Length = 1556

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 13/38 (34%), Positives = 27/38 (71%)
 Frame = +3

Query: 120  QERLEELRARYAGTQSQRADKKNSKTLDIAELEKSIAE 233
            ++R+EEL  R    ++Q+AD +++K  +IA+L+ ++ E
Sbjct: 894  EKRVEELTWRLELEKNQKADLEDAKAQEIAKLQNNLTE 931


>At3g18940.1 68416.m02404 clast3-related contains Prosite PS00626:
           Regulator of chromosome condensation (RCC1) signature 2;
           similar to Clast3 protein (GI:9857631) [Mus musculus]
          Length = 281

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 16/52 (30%), Positives = 28/52 (53%)
 Frame = +2

Query: 128 ARGAESEVRRHAEPEGR*EKLQNVGYS*IREVDS*AGRCSQKMKSTTKDKSV 283
           +RG +     +AE +GR +  + +G+  + E DS  GRC + + S  +  SV
Sbjct: 134 SRGPQVYYLSNAESDGRDDHCERLGFGRLHEYDS-EGRCWKYLSSVFEKNSV 184


>At2g34357.1 68415.m04206 expressed protein
          Length = 1280

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 25/105 (23%), Positives = 45/105 (42%), Gaps = 1/105 (0%)
 Frame = +3

Query: 117  EQERLEELRARYAGTQSQRADKKNSKTLDI-AELEKSIAEQGDAVRK*SRQRKISQSGNP 293
            ++E   ++  R    + +R+ +K     D  A+  K     G++ +K  ++ K S+SG  
Sbjct: 1131 DEEAEFDVEGRLVIREGERSKRKELSDADSDAKSSKGSRFSGNSSKKNQKRMKTSESGYA 1190

Query: 294  KSRSC*S*RNGSPKLRSKLKRDHQRTRPLAMWPA*RKLLLSRAMQ 428
             +         S K    LK+   +  P A WP  RK++  R  Q
Sbjct: 1191 YTGK----EYASKKASGDLKKK-DKLEPYAYWPLDRKMMSRRPEQ 1230


>At5g56680.1 68418.m07075 asparaginyl-tRNA synthetase 1, cytoplasmic
           / asparagine-tRNA ligase 1 (SYNC1) identical to
           SP|Q9SW96
          Length = 572

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 18/60 (30%), Positives = 28/60 (46%)
 Frame = +1

Query: 541 PPANQAAGDVASLEIAIAEQGDKVRKLKASAKDKAVWQPEVNVLLDLKNVSKHCKSRNKL 720
           PP  +A  DV +  + + E+G+ V +LKA+   K      V  L   K    H   R++L
Sbjct: 230 PPPTEA--DVEAARLIVIERGNVVAELKAAKASKEAITAAVAELKIAKETFAHIDERSRL 287


>At1g20610.1 68414.m02575 cyclin, putative similar to
           G2/mitotic-specific cyclins (B-like cyclin) from
           {Medicago varia} SP|P46278, SP|P46277; contains Pfam
           profiles PF00134: Cyclin, N-terminal domain, PF02984:
           Cyclin, C-terminal domain
          Length = 429

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +3

Query: 96  EPLFVKIEQERLEELRARYAGTQSQRADKKNSKTLDIAELEKS 224
           EP+FV+  +  LEE+       + + ADK+    +DI   +K+
Sbjct: 127 EPMFVQHTEAMLEEIEQMEKEIEMEDADKEEEPVIDIDACDKN 169


>At3g12170.1 68416.m01518 DNAJ heat shock N-terminal
           domain-containing protein similar to SP|Q9QYI7 DnaJ
           homolog subfamily B member 8 [Mus musculus]; contains
           Pfam profile: PF00226 DnaJ domain
          Length = 262

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = +3

Query: 102 LFVKIEQERLEELRARYAGTQSQRAD 179
           ++ K+ +E +EE  A Y G++S++ D
Sbjct: 98  MYKKVTEEDIEEFEANYRGSESEKND 123


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,802,135
Number of Sequences: 28952
Number of extensions: 214833
Number of successful extensions: 737
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 737
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1594686376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)