Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10513
         (704 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC126.11c |||RNA-binding protein, rrm type|Schizosaccharomyces...    32   0.092
SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1 |Schizosacch...    27   2.6  
SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces ...    27   3.5  
SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomy...    25   8.0  

>SPCC126.11c |||RNA-binding protein, rrm type|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 183

 Score = 31.9 bits (69), Expect = 0.092
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = -1

Query: 572 NQPQSSNTNDKSKGGVHVRGPDSFTHKYIYNIAP 471
           NQ + SN+N +S G + +RG    T+  I N+AP
Sbjct: 76  NQTKPSNSNSQSNGAISIRGIAGPTNVVIENLAP 109


>SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 593

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = -1

Query: 599 NSYVRRNWNNQPQSSNTNDKSKGGVHVRGPDSFTHKYIYNIAPS 468
           NS+ RR    + Q S TN++S GG H    ++F +    +I+PS
Sbjct: 17  NSHFRRTVEEKSQLSGTNEESLGG-HTLSSNAFKNN-SSSISPS 58


>SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 632

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -3

Query: 417 KVFFYHYKYITAYIIINRTYS 355
           K+F YH+ +I  Y II+ +Y+
Sbjct: 2   KLFLYHFTFIVYYFIISFSYA 22


>SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -1

Query: 560 SSNTNDKSKGGVHVRGPDSFTHKYIYNIAPSI 465
           S +  ++SK  + +RG  S  H+Y  N+  S+
Sbjct: 378 SESEAEESKTSIKLRGASSSFHRYAKNLVESV 409


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,661,536
Number of Sequences: 5004
Number of extensions: 53273
Number of successful extensions: 151
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)