Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10513
         (704 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_1106 - 10187609-10190041,10190292-10191932                       31   1.2  
01_01_1157 - 9203448-9203560,9204725-9204768,9205345-9205433,920...    30   1.6  
06_02_0020 - 10675108-10676101,10676204-10676865,10676981-10677322     28   8.3  
03_02_1008 - 13170630-13171481                                         28   8.3  
03_02_0386 + 8009884-8010133,8010274-8010338,8010545-8010658,801...    28   8.3  

>07_01_1106 - 10187609-10190041,10190292-10191932
          Length = 1357

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 18/59 (30%), Positives = 26/59 (44%)
 Frame = -1

Query: 329  NTSDDTTNNKYNTIKNRQNTNESRVQVGSVVNIIISRANKETNLKWRRRSCALTLNYCC 153
            N  DD ++     +KN        V +  + NI      KE NL  ++   ALTL +CC
Sbjct: 1053 NIGDDLSHCSIRDLKNLSGLR-GHVHITGLQNITAGDDAKEANLVGKQFLQALTLEWCC 1110


>01_01_1157 -
           9203448-9203560,9204725-9204768,9205345-9205433,
           9205565-9205609,9205805-9205912,9206003-9206088,
           9206492-9206579,9206725-9206910,9207181-9207256,
           9207332-9207381,9207715-9207777,9207882-9207962,
           9208028-9208130,9208246-9208348,9208489-9208549,
           9209059-9209154,9209185-9209225,9209848-9209922,
           9210412-9210562
          Length = 552

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -2

Query: 700 FFFFYITYLNIIFIKKYNLTIYIYDFTFKLN 608
           F +F + Y +I+F +K  +T    DFTF LN
Sbjct: 85  FLYFMVQYDDILFHEKRRVTSVTIDFTFGLN 115


>06_02_0020 - 10675108-10676101,10676204-10676865,10676981-10677322
          Length = 665

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 8/47 (17%)
 Frame = +3

Query: 255 DAGFVRVLSIFYC--------IVLIICCIVASITRSMNGLYLNMFDL 371
           D  + R +  FYC        IV+I+   + +I    NG++++MF L
Sbjct: 60  DTHYPRYIMFFYCNAAAFALSIVVIVLIFILAILHEKNGIWISMFPL 106


>03_02_1008 - 13170630-13171481
          Length = 283

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = -1

Query: 608 STNNSYVRRNWNNQPQSSNTNDKSKGGVHVRGPDSF 501
           ST  S  R    NQ QSS++N ++ G    R P SF
Sbjct: 236 STGASCSRTRSTNQSQSSSSNGRTNGRQRRRNPFSF 271


>03_02_0386 +
           8009884-8010133,8010274-8010338,8010545-8010658,
           8010736-8010895,8010975-8011093,8011209-8011635,
           8011834-8012057,8012863-8012973,8013056-8013188,
           8013259-8013365,8013430-8013444,8013482-8013571,
           8013855-8013917,8013973-8014053,8014136-8014208,
           8014312-8014367,8014460-8014554,8014649-8014683,
           8015449-8015525
          Length = 764

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 15/46 (32%), Positives = 27/46 (58%)
 Frame = -3

Query: 177 RSHSKLLLSLVAHSAYCMQKKLSVLTGK*YGLSQTRKILHSDAPEI 40
           R+ SKL L+ VAH+    +K+++  + K YG  + R+   SD  ++
Sbjct: 219 RTPSKLYLNNVAHNIRSKEKRVNGDSEKVYGSDEMREDSESDLSDL 264


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,747,193
Number of Sequences: 37544
Number of extensions: 293241
Number of successful extensions: 609
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 609
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)