Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10513
         (704 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19405| Best HMM Match : DMP1 (HMM E-Value=3.8)                      33   0.17 
SB_30938| Best HMM Match : DAGK_acc (HMM E-Value=1.4013e-45)           31   1.2  
SB_55478| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_55731| Best HMM Match : DUF988 (HMM E-Value=7.2)                    29   3.7  
SB_25169| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.9  
SB_51992| Best HMM Match : C2 (HMM E-Value=0.00041)                    29   4.9  
SB_9125| Best HMM Match : Sulfotransfer_2 (HMM E-Value=1.4013e-45)     29   4.9  
SB_38308| Best HMM Match : Vicilin_N (HMM E-Value=0.26)                28   6.4  
SB_17718| Best HMM Match : Ribosomal_L2 (HMM E-Value=7.3)              28   8.5  

>SB_19405| Best HMM Match : DMP1 (HMM E-Value=3.8)
          Length = 551

 Score = 33.5 bits (73), Expect = 0.17
 Identities = 19/52 (36%), Positives = 27/52 (51%)
 Frame = -1

Query: 332 CNTSDDTTNNKYNTIKNRQNTNESRVQVGSVVNIIISRANKETNLKWRRRSC 177
           CNTS++ +N K NT +NR N   +R    +  N   SR+NK    + R   C
Sbjct: 436 CNTSENRSN-KCNTSENRSNKCNTRENRSNKCNTSESRSNKCNTSESRSNKC 486



 Score = 33.1 bits (72), Expect = 0.23
 Identities = 20/57 (35%), Positives = 29/57 (50%)
 Frame = -1

Query: 332 CNTSDDTTNNKYNTIKNRQNTNESRVQVGSVVNIIISRANKETNLKWRRRSCALTLN 162
           CNTS++ +N K NT +NR N   +R    +  N   SR+NK    + R   C  + N
Sbjct: 376 CNTSENRSN-KCNTGENRSNKCNTRENRSNKCNTSESRSNKCNTSESRSNKCNTSEN 431



 Score = 32.3 bits (70), Expect = 0.39
 Identities = 19/52 (36%), Positives = 27/52 (51%)
 Frame = -1

Query: 332 CNTSDDTTNNKYNTIKNRQNTNESRVQVGSVVNIIISRANKETNLKWRRRSC 177
           CNTS++ +N K NT +NR N   +R    +  N   SR+NK    + R   C
Sbjct: 336 CNTSENRSN-KCNTRENRSNKCNTRENRSNKCNTRESRSNKCNTSENRSNKC 386



 Score = 30.7 bits (66), Expect = 1.2
 Identities = 18/52 (34%), Positives = 27/52 (51%)
 Frame = -1

Query: 332 CNTSDDTTNNKYNTIKNRQNTNESRVQVGSVVNIIISRANKETNLKWRRRSC 177
           CNTS++ +N K NT ++R N   +R    +  N   SR+NK    + R   C
Sbjct: 266 CNTSENRSN-KCNTRESRSNKCNTRENRSNKCNTSESRSNKCNTSENRSNKC 316



 Score = 30.7 bits (66), Expect = 1.2
 Identities = 18/52 (34%), Positives = 26/52 (50%)
 Frame = -1

Query: 332 CNTSDDTTNNKYNTIKNRQNTNESRVQVGSVVNIIISRANKETNLKWRRRSC 177
           CNTS++ +N K NT +NR N   +     +  N   SR+NK    + R   C
Sbjct: 446 CNTSENRSN-KCNTRENRSNKCNTSESRSNKCNTSESRSNKCNTSESRSNKC 496



 Score = 29.9 bits (64), Expect = 2.1
 Identities = 17/52 (32%), Positives = 28/52 (53%)
 Frame = -1

Query: 332 CNTSDDTTNNKYNTIKNRQNTNESRVQVGSVVNIIISRANKETNLKWRRRSC 177
           CNTS++ +N K NT ++R N  ++R    +  N   +R+NK    + R   C
Sbjct: 306 CNTSENRSN-KCNTRESRSNKCKTRENRSNKCNTSENRSNKCNTRENRSNKC 356



 Score = 29.5 bits (63), Expect = 2.8
 Identities = 17/52 (32%), Positives = 26/52 (50%)
 Frame = -1

Query: 332 CNTSDDTTNNKYNTIKNRQNTNESRVQVGSVVNIIISRANKETNLKWRRRSC 177
           CNTS+ + +NK NT +NR N   +     +  N   +R+NK    + R   C
Sbjct: 416 CNTSE-SRSNKCNTSENRSNKCNTSENRSNKCNTSENRSNKCNTRENRSNKC 466



 Score = 29.5 bits (63), Expect = 2.8
 Identities = 17/52 (32%), Positives = 26/52 (50%)
 Frame = -1

Query: 332 CNTSDDTTNNKYNTIKNRQNTNESRVQVGSVVNIIISRANKETNLKWRRRSC 177
           CNTS++ +N K NT +NR N   +     +  N   +R+NK    + R   C
Sbjct: 426 CNTSENRSN-KCNTSENRSNKCNTSENRSNKCNTRENRSNKCNTSESRSNKC 476



 Score = 29.5 bits (63), Expect = 2.8
 Identities = 18/57 (31%), Positives = 28/57 (49%)
 Frame = -1

Query: 332 CNTSDDTTNNKYNTIKNRQNTNESRVQVGSVVNIIISRANKETNLKWRRRSCALTLN 162
           CNTS+ + +NK NT ++R N   +     +  N   SR+NK    + R   C  + N
Sbjct: 466 CNTSE-SRSNKCNTSESRSNKCNTSESRSNKCNTSESRSNKCNTSESRSNKCNTSEN 521



 Score = 29.1 bits (62), Expect = 3.7
 Identities = 17/52 (32%), Positives = 26/52 (50%)
 Frame = -1

Query: 332 CNTSDDTTNNKYNTIKNRQNTNESRVQVGSVVNIIISRANKETNLKWRRRSC 177
           CNTS+ + +NK NT +NR N   +R    +      +R+NK    + R   C
Sbjct: 296 CNTSE-SRSNKCNTSENRSNKCNTRESRSNKCKTRENRSNKCNTSENRSNKC 346



 Score = 29.1 bits (62), Expect = 3.7
 Identities = 18/57 (31%), Positives = 27/57 (47%)
 Frame = -1

Query: 332 CNTSDDTTNNKYNTIKNRQNTNESRVQVGSVVNIIISRANKETNLKWRRRSCALTLN 162
           CNT ++ +N K NT +NR N   +     +  N   SR+NK    + R   C  + N
Sbjct: 386 CNTGENRSN-KCNTRENRSNKCNTSESRSNKCNTSESRSNKCNTSENRSNKCNTSEN 441



 Score = 28.7 bits (61), Expect = 4.9
 Identities = 17/52 (32%), Positives = 26/52 (50%)
 Frame = -1

Query: 332 CNTSDDTTNNKYNTIKNRQNTNESRVQVGSVVNIIISRANKETNLKWRRRSC 177
           CNT ++ +N K NT +NR N   +R    +  N   +R+NK    + R   C
Sbjct: 346 CNTRENRSN-KCNTRENRSNKCNTRESRSNKCNTSENRSNKCNTGENRSNKC 396



 Score = 28.7 bits (61), Expect = 4.9
 Identities = 17/52 (32%), Positives = 26/52 (50%)
 Frame = -1

Query: 332 CNTSDDTTNNKYNTIKNRQNTNESRVQVGSVVNIIISRANKETNLKWRRRSC 177
           CNTS+ + +NK NT ++R N   +     +  N   SR+NK    + R   C
Sbjct: 476 CNTSE-SRSNKCNTSESRSNKCNTSESRSNKCNTSESRSNKCNTSENRSNKC 526



 Score = 27.9 bits (59), Expect = 8.5
 Identities = 17/57 (29%), Positives = 27/57 (47%)
 Frame = -1

Query: 332 CNTSDDTTNNKYNTIKNRQNTNESRVQVGSVVNIIISRANKETNLKWRRRSCALTLN 162
           C T ++ +N K NT +NR N   +R    +  N   +R+NK    + R   C  + N
Sbjct: 326 CKTRENRSN-KCNTSENRSNKCNTRENRSNKCNTRENRSNKCNTRESRSNKCNTSEN 381


>SB_30938| Best HMM Match : DAGK_acc (HMM E-Value=1.4013e-45)
          Length = 709

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 11/24 (45%), Positives = 19/24 (79%)
 Frame = -1

Query: 317 DTTNNKYNTIKNRQNTNESRVQVG 246
           DT+ N+ NT +NR NT+ ++V++G
Sbjct: 115 DTSENRSNTSENRSNTSATQVRIG 138


>SB_55478| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 126

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
 Frame = -2

Query: 511 PTHSLINTFITLHLQFYYQLI-IHTKKSYMPSKSLFLSLQ 395
           P ++LI+    LHL FY++   +H   S +PSKS FL +Q
Sbjct: 70  PKNTLIHDIRNLHLVFYFRTSDLHV--SPLPSKSQFLVMQ 107


>SB_55731| Best HMM Match : DUF988 (HMM E-Value=7.2)
          Length = 140

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -2

Query: 532 GAFTSAGPTHSLINTFITLHLQFYYQLIIHTKKSY 428
           GA +    T   I+ FI +HLQ  Y+L++  K+SY
Sbjct: 106 GAASLLTATVISIDRFIAVHLQNSYRLVVSKKRSY 140


>SB_25169| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 127

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 16/45 (35%), Positives = 25/45 (55%)
 Frame = -1

Query: 329 NTSDDTTNNKYNTIKNRQNTNESRVQVGSVVNIIISRANKETNLK 195
           NTS++ +N K NT +NR NT  +  +  S  N   S +  ++N K
Sbjct: 7   NTSENQSNTKRNTSENRSNTRRNTSENQS--NTKRSTSENQSNTK 49


>SB_51992| Best HMM Match : C2 (HMM E-Value=0.00041)
          Length = 391

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = -1

Query: 608 STNNSYVRRNWNNQPQSSNTNDKSKGGVHVRGPDSFTHKYIYNIAPSILLSVNYT-HKKI 432
           + NN+    N N+   ++N N+K +G V  +G D   +K  Y      L SV  + +K +
Sbjct: 304 NNNNNNNNNNRNSNNNNNNNNNKKEGSVICQGLD---YKCRYRTIHWKLFSVRLSCYKNV 360

Query: 431 VH 426
           VH
Sbjct: 361 VH 362


>SB_9125| Best HMM Match : Sulfotransfer_2 (HMM E-Value=1.4013e-45)
          Length = 480

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = -2

Query: 409 FLSLQIHYSLHYYKSNIFRYNPFIDRVILA 320
           F + Q+ Y L YYK  +F  NP +DR+I A
Sbjct: 301 FSNEQVEYRLKYYKKFMFVRNP-LDRIISA 329


>SB_38308| Best HMM Match : Vicilin_N (HMM E-Value=0.26)
          Length = 286

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -2

Query: 544 TNQRGAFTSAGPTHSLINTFITLH 473
           T Q G FT  GP + L+N  IT H
Sbjct: 251 TEQNGFFTFQGPRNGLLNRQITFH 274


>SB_17718| Best HMM Match : Ribosomal_L2 (HMM E-Value=7.3)
          Length = 112

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -2

Query: 544 TNQRGAFTSAGPTHSLINTFITLH 473
           T Q G FT  GP + L+N  IT H
Sbjct: 7   TMQNGLFTFYGPKNGLVNRKITFH 30


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,201,111
Number of Sequences: 59808
Number of extensions: 379636
Number of successful extensions: 1914
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 928
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1755
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)