Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10513
         (704 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g58390.1 68418.m07312 peroxidase, putative similar to peroxid...    29   3.0  
At5g49730.1 68418.m06158 ferric reductase-like transmembrane com...    28   5.2  
At2g05990.2 68415.m00652 enoyl-[acyl-carrier protein] reductase ...    28   5.2  
At2g05990.1 68415.m00651 enoyl-[acyl-carrier protein] reductase ...    28   5.2  
At1g68470.1 68414.m07822 exostosin family protein contains Pfam ...    28   6.9  
At4g37740.1 68417.m05343 expressed protein identical to transcri...    27   9.2  

>At5g58390.1 68418.m07312 peroxidase, putative similar to peroxidase
           [Nicotiana tabacum] gi|5381253|dbj|BAA82306
          Length = 316

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = -1

Query: 602 NNSYVRRNWNNQPQSSNTNDKSKGGVHVRGPDSFTHKY 489
           + S+      N P +S + D  K  + VR PD F H +
Sbjct: 210 DTSFAISKRRNCPATSGSGDNKKANLDVRSPDRFDHGF 247


>At5g49730.1 68418.m06158 ferric reductase-like transmembrane
           component family protein similar to ferric-chelate
           reductase (FRO1) [Pisum sativum] GI:15341529; contains
           Pfam profile PF01794: Ferric reductase like
           transmembrane componenent
          Length = 738

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = -2

Query: 697 FFFYITYLNIIFIKKYNLTIYIYDFTFKLNQQITRTFVETGII 569
           F   IT L+I +IK+YN+T + Y     +   +    +  G++
Sbjct: 579 FISMITLLDIFYIKRYNITTWWYKGLLFVGCMVASVLIFGGLV 621


>At2g05990.2 68415.m00652 enoyl-[acyl-carrier protein] reductase
           [NADH], chloroplast, putative / NADH-dependent enoyl-ACP
           reductase, putative strong similarity to
           enoyl-[acyl-carrier protein] reductase [NADH] SP:P80030
           from [Brassica napus]
          Length = 390

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = -1

Query: 203 NLKWRRRSCALTL-NYCCL*SHTARTACKKNYRF 105
           N  W + SC   L N  CL +H+A   CK+ + F
Sbjct: 38  NASWDKLSCTRQLSNLGCLRNHSAVPTCKRPFSF 71


>At2g05990.1 68415.m00651 enoyl-[acyl-carrier protein] reductase
           [NADH], chloroplast, putative / NADH-dependent enoyl-ACP
           reductase, putative strong similarity to
           enoyl-[acyl-carrier protein] reductase [NADH] SP:P80030
           from [Brassica napus]
          Length = 390

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = -1

Query: 203 NLKWRRRSCALTL-NYCCL*SHTARTACKKNYRF 105
           N  W + SC   L N  CL +H+A   CK+ + F
Sbjct: 38  NASWDKLSCTRQLSNLGCLRNHSAVPTCKRPFSF 71


>At1g68470.1 68414.m07822 exostosin family protein contains Pfam
           profile: PF03016 Exostosin family
          Length = 455

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 24/111 (21%), Positives = 41/111 (36%)
 Frame = -2

Query: 652 YNLTIYIYDFTFKLNQQITRTFVETGIINLSLPTQMTNQRGAFTSAGPTHSLINTFITLH 473
           +N T+Y+YD   + N  + +      I     P    N  G     G T           
Sbjct: 69  HNFTVYVYDLPKEFNIGLLQNCRHLNIYTNMCPHVANNGLGQPLHRGRTSWFSTHQFIAE 128

Query: 472 LQFYYQLIIHTKKSYMPSKSLFLSLQIHYSLHYYKSNIFRYNPFIDRVILA 320
           + F+ ++  H  ++Y P  +    +  +  L  Y S++FR      R  LA
Sbjct: 129 MIFHARVENHPCRTYEPDTADIFYVPFYGGL--YASSVFREQNLTKRDELA 177


>At4g37740.1 68417.m05343 expressed protein identical to
           transcription activator GRL2 [Arabidopsis thaliana]
           GI:21539882 (unpublished); supporting cDNA
           gi|21539881|gb|AY102635.1|
          Length = 535

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
 Frame = -2

Query: 574 IINLSLPTQMTNQRGAFTSAG----PTHSLINTFITLHLQFYYQLIIHTKKSYMPSKSL 410
           ++N+S+    T  +G FT          +LI  +IT ++     L+I  KKS+ P  SL
Sbjct: 149 MMNMSMQGNFTGVKGPFTLTQWAELEQQALIYKYITANVPVPSSLLISIKKSFYPYGSL 207


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,197,536
Number of Sequences: 28952
Number of extensions: 254589
Number of successful extensions: 619
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 619
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1516419560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)