BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdV10512 (718 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_14345| Best HMM Match : GFO_IDH_MocA (HMM E-Value=3.9e-09) 91 1e-18 SB_51013| Best HMM Match : GFO_IDH_MocA (HMM E-Value=4.7e-31) 37 0.019 SB_3096| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2 SB_29298| Best HMM Match : GFO_IDH_MocA_C (HMM E-Value=2.3e-06) 31 1.2 SB_18643| Best HMM Match : Ion_trans (HMM E-Value=0) 30 1.6 SB_29300| Best HMM Match : GFO_IDH_MocA (HMM E-Value=2.1e-17) 29 5.0 SB_23747| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6 SB_30783| Best HMM Match : RasGAP (HMM E-Value=3.2e-34) 28 8.7 >SB_14345| Best HMM Match : GFO_IDH_MocA (HMM E-Value=3.9e-09) Length = 408 Score = 90.6 bits (215), Expect = 1e-18 Identities = 40/87 (45%), Positives = 63/87 (72%) Frame = +1 Query: 247 LERKGFSVEAIWGITLQEAEIAAKELKIPFFTNKIDDVLLKKNVSLVFIVCAPNLHAQIS 426 L+ GF+V ++WG T +A+ A I + T+KID++LL+++V LV I+C P+ A+++ Sbjct: 21 LKAAGFTVSSLWGCTQHQAKTMAHRYDIGYSTSKIDELLLREDVDLVVILCPPHQRAEVA 80 Query: 427 VKALGIGKHVVCDKPAGLCQAEALKMV 507 VKAL IGKHV+C+ P+GL + EA +MV Sbjct: 81 VKALSIGKHVLCEAPSGLSREEADRMV 107 Score = 82.2 bits (194), Expect = 4e-16 Identities = 36/69 (52%), Positives = 47/69 (68%) Frame = +3 Query: 507 SAAQYYPTLISIVNHSLRFLPAFTHLRQCIQEGYLGDPEELTLIDVRVQMGPLIGDSYNW 686 SAAQYYP L+SI+ H LRF+P F ++Q I++GY G L + D + MG L+G SY+W Sbjct: 108 SAAQYYPRLLSIMKHELRFVPTFIKMKQLIEDGYCG---RLLVCDCHLDMGSLLGISYDW 164 Query: 687 LCDDTMGGG 713 CD MGGG Sbjct: 165 TCDQAMGGG 173 >SB_51013| Best HMM Match : GFO_IDH_MocA (HMM E-Value=4.7e-31) Length = 336 Score = 36.7 bits (81), Expect = 0.019 Identities = 16/41 (39%), Positives = 25/41 (60%) Frame = +1 Query: 373 NVSLVFIVCAPNLHAQISVKALGIGKHVVCDKPAGLCQAEA 495 +V +V+I + H ++ + AL GKHV+C+KP L EA Sbjct: 68 DVEVVYISTVNSTHKELCILALNHGKHVICEKPITLNLKEA 108 >SB_3096| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 994 Score = 30.7 bits (66), Expect = 1.2 Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 3/47 (6%) Frame = -2 Query: 399 TNYEN*THILLEKDVVNFVCEERNFKFFCGYLCFLQSYT---PYCFN 268 T Y H+L V+ + E FCG LQ YT P+CF+ Sbjct: 920 TKYTGPHHVLTVDHVLGMIAEAEKKCTFCGTQLMLQGYTKSHPHCFS 966 >SB_29298| Best HMM Match : GFO_IDH_MocA_C (HMM E-Value=2.3e-06) Length = 805 Score = 30.7 bits (66), Expect = 1.2 Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 1/61 (1%) Frame = +1 Query: 292 LQEAEIAAKELKIPFFTNKIDDVLLKKNVSLVFIVCAPN-LHAQISVKALGIGKHVVCDK 468 LQE + AK L+ + + D +K +VC P LH Q + AL GK V C+K Sbjct: 514 LQERKTHAKVLQFCEASVALSDPSVK-----AVLVCTPTPLHEQCVLMALRAGKAVFCEK 568 Query: 469 P 471 P Sbjct: 569 P 569 >SB_18643| Best HMM Match : Ion_trans (HMM E-Value=0) Length = 1885 Score = 30.3 bits (65), Expect = 1.6 Identities = 18/68 (26%), Positives = 33/68 (48%) Frame = -3 Query: 383 KLTFFLRRTSSILFVKKGILSSFAAISASCKVIPHIASTENPFLSRKAPEL*QSLLFQKP 204 K ++ + +S + V SS+ I+ + +P++A T NP SRK+ + + +K Sbjct: 193 KSSYVVGTKTSYIAVTSSRKSSYVVITVKSRKLPYVAVTVNPRKSRKSSFVVTVVNSRKS 252 Query: 203 QYPVTLSL 180 Y V L Sbjct: 253 SYNVVCEL 260 >SB_29300| Best HMM Match : GFO_IDH_MocA (HMM E-Value=2.1e-17) Length = 634 Score = 28.7 bits (61), Expect = 5.0 Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%) Frame = +1 Query: 391 IVCAPN-LHAQISVKALGIGKHVVCDKP 471 ++C P +H Q + AL GK V C+KP Sbjct: 76 VICTPTPVHEQCVLMALRAGKAVFCEKP 103 >SB_23747| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 853 Score = 28.3 bits (60), Expect = 6.6 Identities = 12/36 (33%), Positives = 20/36 (55%) Frame = +1 Query: 460 CDKPAGLCQAEALKMVLQHSIIQRSFLLLIIH*DFY 567 CD+ A + A+AL ++ H + +R L + H D Y Sbjct: 674 CDEEASIFPADALTTLVSHQLKKRFMFLPLKHGDMY 709 >SB_30783| Best HMM Match : RasGAP (HMM E-Value=3.2e-34) Length = 912 Score = 27.9 bits (59), Expect = 8.7 Identities = 10/25 (40%), Positives = 17/25 (68%) Frame = -2 Query: 519 TVLQNHLQCFSLAQSRWFITNNMFS 445 + L +HLQ F L+ S WF+++ + S Sbjct: 571 STLSDHLQIFPLSVSEWFVSSGLQS 595 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 21,685,609 Number of Sequences: 59808 Number of extensions: 444002 Number of successful extensions: 1067 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 981 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1066 length of database: 16,821,457 effective HSP length: 80 effective length of database: 12,036,817 effective search space used: 1901817086 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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