Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10512
         (718 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical pr...    23   5.7  
Z81564-1|CAB04567.1|  284|Caenorhabditis elegans Hypothetical pr...    28   5.8  
Z82269-3|CAB05207.2| 1319|Caenorhabditis elegans Hypothetical pr...    28   7.7  
Z82269-2|CAJ76945.1| 1129|Caenorhabditis elegans Hypothetical pr...    28   7.7  

>U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical protein
            ZK783.1 protein.
          Length = 2585

 Score = 23.4 bits (48), Expect(2) = 5.7
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +3

Query: 411  SCSDICQSTWYRKTCC 458
            SC DI + T +  TCC
Sbjct: 1489 SCQDIDECTEHNSTCC 1504



 Score = 23.0 bits (47), Expect(2) = 5.7
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = +3

Query: 354  RRPSQEECEFSFHSLCPKSSCSDI 425
            RR     CE  F    PK SC D+
Sbjct: 1428 RRTGVCRCEPGFEGAPPKKSCVDV 1451


>Z81564-1|CAB04567.1|  284|Caenorhabditis elegans Hypothetical
           protein K05C4.1 protein.
          Length = 284

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -2

Query: 264 KSFPFKKGTRTLAIAPVPKTPI-PGNIVLTLFS 169
           KS  F+KGT TLA    P TP   G I++ + S
Sbjct: 57  KSMQFRKGTTTLAFVYEPATPADKGGIIVAVDS 89


>Z82269-3|CAB05207.2| 1319|Caenorhabditis elegans Hypothetical protein
            F52G2.2a protein.
          Length = 1319

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -1

Query: 256  SFQERHQNFSNRSCSKNPNTR 194
            S+Q  HQNF NRS + N + R
Sbjct: 1171 SYQSSHQNFDNRSAAHNGDGR 1191


>Z82269-2|CAJ76945.1| 1129|Caenorhabditis elegans Hypothetical protein
            F52G2.2b protein.
          Length = 1129

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -1

Query: 256  SFQERHQNFSNRSCSKNPNTR 194
            S+Q  HQNF NRS + N + R
Sbjct: 981  SYQSSHQNFDNRSAAHNGDGR 1001


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,486,551
Number of Sequences: 27780
Number of extensions: 353204
Number of successful extensions: 786
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 748
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 786
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)