Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10512
         (718 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g20790.1 68416.m02629 oxidoreductase family protein weak simi...    37   0.012
At1g34200.1 68414.m04243 oxidoreductase family protein similar t...    32   0.44 
At4g09670.1 68417.m01588 oxidoreductase family protein similar t...    31   0.76 
At2g40280.1 68415.m04958 dehydration-responsive family protein s...    31   0.76 
At2g29890.1 68415.m03630 villin 1 (VLN1) nearly identical to vil...    30   1.3  
At1g19370.1 68414.m02410 expressed protein                             30   1.8  
At1g05470.1 68414.m00556 endonuclease/exonuclease/phosphatase fa...    29   4.1  
At5g41970.1 68418.m05110 expressed protein contains Pfam profile...    27   9.4  
At3g45380.1 68416.m04899 hypothetical protein contains Pfam prof...    27   9.4  
At2g35880.1 68415.m04405 expressed protein                             27   9.4  

>At3g20790.1 68416.m02629 oxidoreductase family protein weak
           similarity to SP|Q07982 Glucose--fructose oxidoreductase
           precursor (EC 1.1.99.28) {Zymomonas mobilis}; contains
           Pfam profiles PF01408: Oxidoreductase family NAD-binding
           Rossmann fold, PF02894: Oxidoreductase family C-terminal
           alpha/beta domain
          Length = 355

 Score = 37.1 bits (82), Expect = 0.012
 Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 7/82 (8%)
 Frame = +1

Query: 268 VEAIWGITLQEA----EIAAK---ELKIPFFTNKIDDVLLKKNVSLVFIVCAPNLHAQIS 426
           ++AIW  T + A    EIA K   E+K  +    +++++   ++  V +V A     ++S
Sbjct: 35  LKAIWSRTEESAKGAVEIARKHFPEVKCKWGDEGLNEIIQDSSIVGVAVVVAAETMVELS 94

Query: 427 VKALGIGKHVVCDKPAGLCQAE 492
           +K L  GKHV+ +KPA    +E
Sbjct: 95  LKMLKAGKHVLQEKPAAASISE 116


>At1g34200.1 68414.m04243 oxidoreductase family protein similar to
           AX110P [Daucus carota] GI:285739; contains Pfam profiles
           PF01408: Oxidoreductase family NAD-binding Rossmann
           fold, PF02894: Oxidoreductase family C-terminal
           alpha/beta domain
          Length = 352

 Score = 31.9 bits (69), Expect = 0.44
 Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
 Frame = +1

Query: 289 TLQEAEIAAKELKIPFFT---NKIDDVLLKKNVSLVFIVCAPNLHAQISVKALGIGKHVV 459
           +++EA+  AK    P  T   +  + +L   +V  V+      LH + +  A   GKH++
Sbjct: 41  SIEEAKSFAKSNNFPPNTKLHSSYESLLEDPDVDAVYFPIPTRLHVEWATLAAIKGKHIL 100

Query: 460 CDKPAGLCQAE 492
            DKP  L  AE
Sbjct: 101 LDKPVALNVAE 111


>At4g09670.1 68417.m01588 oxidoreductase family protein similar to
           AX110P [Daucus carota] GI:285739; contains Pfam profiles
           PF01408: Oxidoreductase family NAD-binding Rossmann
           fold, PF02894: Oxidoreductase family C-terminal
           alpha/beta domain
          Length = 362

 Score = 31.1 bits (67), Expect = 0.76
 Identities = 13/52 (25%), Positives = 28/52 (53%)
 Frame = +1

Query: 352 DDVLLKKNVSLVFIVCAPNLHAQISVKALGIGKHVVCDKPAGLCQAEALKMV 507
           + +L    +  +++    +LH + ++KA   GKH++ +KP  +   E  K+V
Sbjct: 64  ESLLEDPEIDALYVPLPTSLHVEWAIKAAEKGKHILLEKPVAMNVTEFDKIV 115


>At2g40280.1 68415.m04958 dehydration-responsive family protein
           similar to early-responsive to dehydration stress ERD3
           protein [Arabidopsis thaliana] GI:15320410; contains
           Pfam profile PF03141: Putative methyltransferase
          Length = 589

 Score = 31.1 bits (67), Expect = 0.76
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = -2

Query: 258 FPFKKGTRTLAIAPVPKTPIPGNIVLTLFSLTFNKVRLQT 139
           FPF   + T    P+PK+PIP  IV      T  K++L T
Sbjct: 32  FPFPSLSTTDYYTPIPKSPIPHRIVDVSSDQTPQKMKLNT 71


>At2g29890.1 68415.m03630 villin 1 (VLN1) nearly identical to villin
           1 (VLN1) [Arabidopsis thaliana] GI:3415113
          Length = 909

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 15/61 (24%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
 Frame = +1

Query: 325 KIPFFTNKI--DDVLLKKNVSLVFIVCAPNLHAQISVKALGIGKHVVCDKPAGLCQAEAL 498
           ++PF  + +  DDV +    S VF+    N   Q   KA+ + +++  +K  G C+   +
Sbjct: 153 EVPFLRSSLNHDDVFILDTASKVFLFAGCNSSTQEKAKAMEVVEYIKDNKHDGRCEVATI 212

Query: 499 K 501
           +
Sbjct: 213 E 213


>At1g19370.1 68414.m02410 expressed protein
          Length = 605

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = -2

Query: 459 NNMFSYTKCFDRYLSMKIWG-TNYEN*THILLEKDVVNFVCEERNFKFF 316
           N+  + T  FD     K +G T+     H+LL  D++NF C  R+ K F
Sbjct: 318 NHSLARTYVFDAAERSKAYGFTSEGEIIHVLLHGDIMNFKCRVRSKKKF 366


>At1g05470.1 68414.m00556 endonuclease/exonuclease/phosphatase
           family protein simlar to inositol polyphosphate
           5-phosphatase I (GI:10444261) and II (GI:10444263)
           [Arabidopsis thaliana]; contains Pfam profile PF03372:
           Endonuclease/Exonuclease/phosphatase family
          Length = 585

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 17/63 (26%), Positives = 27/63 (42%)
 Frame = -3

Query: 545 NNRNERWIILCCRTIFNASAWHSPAGLSQTTCFPIPSALTDI*A*RFGAQTMKTKLTFFL 366
           N   ++W+ L  +T+ N       +G    +  P+P A  D     F   T +   TFF 
Sbjct: 114 NGPAQKWLSLIRKTLNNRPGTSGTSGYHTPSPIPVPMAELDA---DFSGSTRQKNSTFFH 170

Query: 365 RRT 357
           RR+
Sbjct: 171 RRS 173


>At5g41970.1 68418.m05110 expressed protein contains Pfam profile
           PF03690: Uncharacterised protein family (UPF0160)
          Length = 346

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 13/38 (34%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
 Frame = +3

Query: 531 LISIVNHSLRFLPAFTHLRQCIQEGYLGDPE-ELTLID 641
           L S+  H+  +LPA + + QC++E +  DP  E+ ++D
Sbjct: 207 LESVQFHARSWLPARSIVMQCLEERFKTDPSGEIMILD 244


>At3g45380.1 68416.m04899 hypothetical protein contains Pfam profile
           PF03384: Drosophila protein of unknown function, DUF287
          Length = 690

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 11/37 (29%), Positives = 23/37 (62%)
 Frame = +3

Query: 543 VNHSLRFLPAFTHLRQCIQEGYLGDPEELTLIDVRVQ 653
           + + ++F+ + T L Q + +G+    +++  IDVRVQ
Sbjct: 527 IENEIQFVASITSLTQMMTKGFDETKDKIDAIDVRVQ 563


>At2g35880.1 68415.m04405 expressed protein
          Length = 432

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = -3

Query: 479 SPAGLSQTTCFPIPSALTDI*A*RFGAQTMKTKL 378
           SP  +SQ++ FP   A TDI      A T KT L
Sbjct: 89  SPRFMSQSSSFPTKGAYTDITRKSIDATTSKTSL 122


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,233,385
Number of Sequences: 28952
Number of extensions: 314030
Number of successful extensions: 741
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 741
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1555552968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)