Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10511
         (743 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC115.03 ||SPBC839.18c|gfo/idh/mocA family oxidoreductase |Sch...    53   4e-08
SPAC26H5.09c |||GFO/IDH/MocA family oxidoreductase|Schizosacchar...    52   9e-08
SPAC513.06c |||dihydrodiol dehydrogenase |Schizosaccharomyces po...    28   1.2  
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    27   2.8  
SPAC6C3.09 |||RNase P subunit |Schizosaccharomyces pombe|chr 1||...    27   3.7  
SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type tran...    26   4.9  
SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain protein|Schizosacchar...    25   8.6  
SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex ...    25   8.6  

>SPBC115.03 ||SPBC839.18c|gfo/idh/mocA family oxidoreductase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 368

 Score = 53.2 bits (122), Expect = 4e-08
 Identities = 30/89 (33%), Positives = 51/89 (57%)
 Frame = +1

Query: 289 TLQEAEIAAKELKIPFFTNKIDDVLLKKNVSLVFIVCAPNLHAQISVKALGIGKHVVCDK 468
           T+ +++  +    I  +TN +D++L   N+ LV +   PN+H++I  KAL  GKHVVC+K
Sbjct: 41  TVTQSKARSAYPNILVYTN-LDELLADVNIELVVVSLPPNVHSEIVKKALNAGKHVVCEK 99

Query: 469 PAGLCQAEALKMVLQHSIIQRSFLLLIIH 555
           P      EA ++   + + +   LLL I+
Sbjct: 100 PFTPTYEEAKEL---YELAESKSLLLAIY 125


>SPAC26H5.09c |||GFO/IDH/MocA family
           oxidoreductase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 369

 Score = 52.0 bits (119), Expect = 9e-08
 Identities = 29/83 (34%), Positives = 45/83 (54%), Gaps = 2/83 (2%)
 Frame = +1

Query: 262 FSVEAIWG--ITLQEAEIAAKELKIPFFTNKIDDVLLKKNVSLVFIVCAPNLHAQISVKA 435
           F V A W    T  E++  A    +  +T K+D++L   N+ LV I   PN+H ++  +A
Sbjct: 30  FEVYAAWERRATSTESKARAAFPNVKVYT-KLDELLADSNIELVVISLPPNVHYEVVSQA 88

Query: 436 LGIGKHVVCDKPAGLCQAEALKM 504
           L  GKHV+C+KP      EA ++
Sbjct: 89  LNAGKHVLCEKPFTPTYGEAKEL 111


>SPAC513.06c |||dihydrodiol dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 368

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 15/52 (28%), Positives = 28/52 (53%)
 Frame = +1

Query: 352 DDVLLKKNVSLVFIVCAPNLHAQISVKALGIGKHVVCDKPAGLCQAEALKMV 507
           ++++    V +V+I      H ++   AL   K V+C+KP  +   EAL++V
Sbjct: 74  EELVKDDKVDIVYISSTHPQHYEVVKLALLNDKAVLCEKPLTINYPEALELV 125


>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1096

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 32/141 (22%), Positives = 64/141 (45%), Gaps = 9/141 (6%)
 Frame = -3

Query: 513 LQNHLQCFSLAQSRW-FITNNMFSYTKCFDRYLSMKIWGTNYEN*THILLEKDVVNFVCE 337
           +QN L  F++A+ R  + +N++ S  K     L  ++    Y     +     V+ ++C+
Sbjct: 163 IQNGLDTFTIAKLRQVYGSNSLVSTKKSIVTILLNEVLHPFY-----LFQAVSVLIWLCD 217

Query: 336 ERNFKFFCGYLCFLQSYTPYCFNRKSFPFKKGTRTLAIAPVPKTPIPGNIVLTLFS---- 169
             +F F+   + F+ SY+ +   ++S   +    ++  AP P T I   +  T+ +    
Sbjct: 218 --SFVFYSCCIVFISSYSIFLSVKESKESENRIHSIIGAPQPVTVIRNQVKQTVLADDLV 275

Query: 168 ----LTFNKVRLQTC*VQSNL 118
               L F+ + L+TC V   L
Sbjct: 276 IGDLLYFSNLDLKTCPVDGIL 296


>SPAC6C3.09 |||RNase P subunit |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 335

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -2

Query: 724 KVKVPPPIVSSHNQL*ESPIKGPICTLTSIS 632
           + K+PPP+VS+ N+    P  GP+  L  +S
Sbjct: 203 QAKIPPPLVSTLNRNELFPSNGPLEVLEILS 233


>SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type
           transcription factor Ams2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 697

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -2

Query: 706 PIVSSHNQL*ESPIKGPICTLTSISVNSSGSPR 608
           P +  H    + P   P+C+ +S +VNS+ S +
Sbjct: 245 PYILDHQAALDHPATDPVCSASSTTVNSAVSTK 277


>SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 682

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +2

Query: 200 IGVFGTGAIAKVLVPFLKGKDFLLKQ 277
           +GV GT  IA V+VP+ + + +L+ Q
Sbjct: 385 LGVVGTFLIAPVIVPYWRMRRYLIIQ 410


>SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex
           subunit Sld3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 668

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -3

Query: 438 KCFDRYLSMKIWGTNYEN*TH 376
           +CF+ +L+ K W   +EN  H
Sbjct: 280 QCFESHLNYKAWHLEFENEAH 300


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,122,337
Number of Sequences: 5004
Number of extensions: 66498
Number of successful extensions: 166
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)