Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10511
         (743 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14345| Best HMM Match : GFO_IDH_MocA (HMM E-Value=3.9e-09)          91   1e-18
SB_51013| Best HMM Match : GFO_IDH_MocA (HMM E-Value=4.7e-31)          37   0.020
SB_3096| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   1.3  
SB_29298| Best HMM Match : GFO_IDH_MocA_C (HMM E-Value=2.3e-06)        31   1.3  
SB_18643| Best HMM Match : Ion_trans (HMM E-Value=0)                   30   1.7  
SB_29300| Best HMM Match : GFO_IDH_MocA (HMM E-Value=2.1e-17)          29   5.3  
SB_23747| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_30783| Best HMM Match : RasGAP (HMM E-Value=3.2e-34)                28   9.2  

>SB_14345| Best HMM Match : GFO_IDH_MocA (HMM E-Value=3.9e-09)
          Length = 408

 Score = 90.6 bits (215), Expect = 1e-18
 Identities = 40/87 (45%), Positives = 63/87 (72%)
 Frame = +1

Query: 247 LERKGFSVEAIWGITLQEAEIAAKELKIPFFTNKIDDVLLKKNVSLVFIVCAPNLHAQIS 426
           L+  GF+V ++WG T  +A+  A    I + T+KID++LL+++V LV I+C P+  A+++
Sbjct: 21  LKAAGFTVSSLWGCTQHQAKTMAHRYDIGYSTSKIDELLLREDVDLVVILCPPHQRAEVA 80

Query: 427 VKALGIGKHVVCDKPAGLCQAEALKMV 507
           VKAL IGKHV+C+ P+GL + EA +MV
Sbjct: 81  VKALSIGKHVLCEAPSGLSREEADRMV 107



 Score = 85.4 bits (202), Expect = 4e-17
 Identities = 39/75 (52%), Positives = 50/75 (66%)
 Frame = +3

Query: 507 SAAQYYPTLISIVNHSLRFLPAFTHMRKCIQEGYLGDPEELTLIDVRVQMGPLIGDSYNW 686
           SAAQYYP L+SI+ H LRF+P F  M++ I++GY G    L + D  + MG L+G SY+W
Sbjct: 108 SAAQYYPRLLSIMKHELRFVPTFIKMKQLIEDGYCG---RLLVCDCHLDMGSLLGISYDW 164

Query: 687 LCDDTMGGGTLTFSG 731
            CD  MGGG LT  G
Sbjct: 165 TCDQAMGGGILTKYG 179


>SB_51013| Best HMM Match : GFO_IDH_MocA (HMM E-Value=4.7e-31)
          Length = 336

 Score = 36.7 bits (81), Expect = 0.020
 Identities = 16/41 (39%), Positives = 25/41 (60%)
 Frame = +1

Query: 373 NVSLVFIVCAPNLHAQISVKALGIGKHVVCDKPAGLCQAEA 495
           +V +V+I    + H ++ + AL  GKHV+C+KP  L   EA
Sbjct: 68  DVEVVYISTVNSTHKELCILALNHGKHVICEKPITLNLKEA 108


>SB_3096| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 994

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
 Frame = -3

Query: 399  TNYEN*THILLEKDVVNFVCEERNFKFFCGYLCFLQSYT---PYCFN 268
            T Y    H+L    V+  + E      FCG    LQ YT   P+CF+
Sbjct: 920  TKYTGPHHVLTVDHVLGMIAEAEKKCTFCGTQLMLQGYTKSHPHCFS 966


>SB_29298| Best HMM Match : GFO_IDH_MocA_C (HMM E-Value=2.3e-06)
          Length = 805

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = +1

Query: 292 LQEAEIAAKELKIPFFTNKIDDVLLKKNVSLVFIVCAPN-LHAQISVKALGIGKHVVCDK 468
           LQE +  AK L+    +  + D  +K       +VC P  LH Q  + AL  GK V C+K
Sbjct: 514 LQERKTHAKVLQFCEASVALSDPSVK-----AVLVCTPTPLHEQCVLMALRAGKAVFCEK 568

Query: 469 P 471
           P
Sbjct: 569 P 569


>SB_18643| Best HMM Match : Ion_trans (HMM E-Value=0)
          Length = 1885

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 18/68 (26%), Positives = 33/68 (48%)
 Frame = -1

Query: 383 KLTFFLRRTSSILFVKKGILSSFAAISASCKVIPHIASTENPFLSRKAPEL*QSLLFQKP 204
           K ++ +   +S + V     SS+  I+   + +P++A T NP  SRK+  +   +  +K 
Sbjct: 193 KSSYVVGTKTSYIAVTSSRKSSYVVITVKSRKLPYVAVTVNPRKSRKSSFVVTVVNSRKS 252

Query: 203 QYPVTLSL 180
            Y V   L
Sbjct: 253 SYNVVCEL 260


>SB_29300| Best HMM Match : GFO_IDH_MocA (HMM E-Value=2.1e-17)
          Length = 634

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +1

Query: 391 IVCAPN-LHAQISVKALGIGKHVVCDKP 471
           ++C P  +H Q  + AL  GK V C+KP
Sbjct: 76  VICTPTPVHEQCVLMALRAGKAVFCEKP 103


>SB_23747| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 853

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +1

Query: 460 CDKPAGLCQAEALKMVLQHSIIQRSFLLLIIH*DFY 567
           CD+ A +  A+AL  ++ H + +R   L + H D Y
Sbjct: 674 CDEEASIFPADALTTLVSHQLKKRFMFLPLKHGDMY 709


>SB_30783| Best HMM Match : RasGAP (HMM E-Value=3.2e-34)
          Length = 912

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -3

Query: 519 TVLQNHLQCFSLAQSRWFITNNMFS 445
           + L +HLQ F L+ S WF+++ + S
Sbjct: 571 STLSDHLQIFPLSVSEWFVSSGLQS 595


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,536,063
Number of Sequences: 59808
Number of extensions: 471546
Number of successful extensions: 1124
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1034
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1123
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2010148439
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)