Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10511
         (743 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    25   0.75 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   3.0  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   3.0  
AY526236-1|AAS20469.1|   85|Apis mellifera epoxide hydrolase pro...    22   5.3  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 25.0 bits (52), Expect = 0.75
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +2

Query: 176 KVRTMLPGIGVFGTGAIAKVLVPFLKGK 259
           +++T +  +G+ G   I  V  P+L+GK
Sbjct: 629 RIQTYIMALGMIGEPKILSVFEPYLEGK 656


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -2

Query: 739 MASPLKVKVPPPIVSSH 689
           + +PL V+V PP++S H
Sbjct: 327 VTAPLHVEVTPPLLSVH 343


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -2

Query: 739 MASPLKVKVPPPIVSSH 689
           + +PL V+V PP++S H
Sbjct: 327 VTAPLHVEVTPPLLSVH 343


>AY526236-1|AAS20469.1|   85|Apis mellifera epoxide hydrolase
           protein.
          Length = 85

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = +3

Query: 519 YYPTLISIVNHSLRFLPAFTHMRKCIQE-GY 608
           Y+P+LI    H  +F P    +   I+E GY
Sbjct: 45  YFPSLIGANEHYSKFFPVSEILSFLIEESGY 75


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,118
Number of Sequences: 438
Number of extensions: 4518
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23266665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)