Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10510
         (804 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    29   0.77 
SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe...    27   2.4  
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    26   5.5  
SPBC1652.01 |||conserved fungal protein|Schizosaccharomyces pomb...    25   9.5  
SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase |Schiz...    25   9.5  
SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces ...    25   9.5  

>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2310

 Score = 29.1 bits (62), Expect = 0.77
 Identities = 12/41 (29%), Positives = 26/41 (63%)
 Frame = +3

Query: 99   YFIKTLFLFEIVKVDDITFWSKNSPSKLFKLMVSRLHEVLV 221
            ++ K +  FE  KV+D+  W+++S S++ K   + L+++ V
Sbjct: 1225 FYKKNISEFEREKVEDVAHWAQSSLSEMAKCFHAELYKLWV 1265


>SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 310

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = +1

Query: 490 YCVDGWRAHSPPGVKWLLEPIDIYN 564
           Y  DG   H P  V WLL P DIY+
Sbjct: 231 YGTDGGPLHDPNTVMWLLRP-DIYS 254


>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 647

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -2

Query: 401 PYIPLAPNSLRDSPLPEDSHPAAAGSRLRASTSPRNCSV 285
           P  P+A ++L     P D+ P+A+ S    +T  RN S+
Sbjct: 114 PLEPIASSALGTVEPPTDNKPSASTSTAVPTTEARNTSI 152


>SPBC1652.01 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 386

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -2

Query: 374 LRDSPLPEDSHPAAAGSRLRASTSP 300
           LRDS +P +SHP +  S     T P
Sbjct: 176 LRDSTIPANSHPQSLPSNSIPKTEP 200


>SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 603

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +1

Query: 616 YKGCPALQAETRYCFTA 666
           Y  CP L +  R+CF+A
Sbjct: 517 YPACPLLTSRVRFCFSA 533


>SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 511

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = +2

Query: 38  TSLATDEEVERRARHERDRQLLHQNIVSV*NSQS*RHHVLEQEQS 172
           T+L +D E  RR  HE   Q L + I  + N    R H LE + S
Sbjct: 381 TTLESDREQLRR--HEEHSQKLLKFIEEIRNDYEERIHALESQNS 423


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,084,106
Number of Sequences: 5004
Number of extensions: 60767
Number of successful extensions: 145
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)