Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10510
         (804 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43199| Best HMM Match : Mab-21 (HMM E-Value=5.7e-12)                41   0.001
SB_14570| Best HMM Match : Mab-21 (HMM E-Value=0.00069)                39   0.004
SB_53811| Best HMM Match : Mab-21 (HMM E-Value=0.003)                  36   0.038
SB_25577| Best HMM Match : Mab-21 (HMM E-Value=1e-05)                  31   1.1  
SB_59772| Best HMM Match : dDENN (HMM E-Value=1.6e-24)                 30   1.9  
SB_12635| Best HMM Match : Chlam_PMP (HMM E-Value=0.018)               30   2.5  
SB_11982| Best HMM Match : GST_N (HMM E-Value=7.9e-15)                 29   3.3  
SB_57649| Best HMM Match : RPE65 (HMM E-Value=9)                       29   5.8  

>SB_43199| Best HMM Match : Mab-21 (HMM E-Value=5.7e-12)
          Length = 364

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
 Frame = +3

Query: 33  LRPALRLMKKLRD--AQGMNAIASYFIKTLFLFEIVKVDDITFWSKNSPSKLFKLMVSRL 206
           ++  LRL+K LR+     M  + SY +KT+  +E  +  D + W  +  ++ FK  V  L
Sbjct: 262 MKQVLRLLKSLREDYMNYMGPLTSYHLKTIVFYECERFPDPSDWDGSKLAERFKSAVLLL 321

Query: 207 HEVLVSGKLPYFWNRETISFGT 272
              + +  LP+++ +    FGT
Sbjct: 322 QYFIKNKYLPHYFIQNLNLFGT 343


>SB_14570| Best HMM Match : Mab-21 (HMM E-Value=0.00069)
          Length = 639

 Score = 39.1 bits (87), Expect = 0.004
 Identities = 23/79 (29%), Positives = 36/79 (45%)
 Frame = +3

Query: 6   RLLMHKTNNLRPALRLMKKLRDAQGMNAIASYFIKTLFLFEIVKVDDITFWSKNSPSKLF 185
           RL    T   R  L L+K ++       I+SYF+K L  +E     + +FW   +  K  
Sbjct: 267 RLAQSLTPVQRHTLVLLKIIKKVYFPEVISSYFLKNLLFWECENNGE-SFWKGTTSGKCL 325

Query: 186 KLMVSRLHEVLVSGKLPYF 242
             M+ RL +    G LP++
Sbjct: 326 LRMLDRLQDCFEKGNLPHY 344


>SB_53811| Best HMM Match : Mab-21 (HMM E-Value=0.003)
          Length = 700

 Score = 35.9 bits (79), Expect = 0.038
 Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
 Frame = +3

Query: 45  LRLMKKL-RDAQGMNA-IASYFIKTLFLFEIVKVDDITFWSKNSPSKLFKLMVSRLHEVL 218
           LR++K + R+   +   ++SY +KT FL  I   D   +W ++     F   ++ LH  L
Sbjct: 231 LRIVKTMVRNESALKGELSSYHLKTAFLRLIKTKDSPGYWHRDLLGDRFLEFITILHNAL 290

Query: 219 VSGKLPYFW 245
               LP++W
Sbjct: 291 RDKSLPHYW 299


>SB_25577| Best HMM Match : Mab-21 (HMM E-Value=1e-05)
          Length = 492

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 17/81 (20%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
 Frame = +3

Query: 9   LLMHKTNNLRPALRLMKKL--RDAQGMNAIASYFIKTLFLFEIVKVDDITFWSKNSPSKL 182
           L  H T  +R    + K +  ++    N ++SY++KT+FL++  ++  +  W + + +++
Sbjct: 382 LFAHMTELMRHCFCVFKGIYYQELTTPNVLSSYYLKTIFLWKCERM-PMNVWVERNVAQV 440

Query: 183 FKLMVSRLHEVLVSGKLPYFW 245
              ++  L   LV+   P+++
Sbjct: 441 IMGLLDDLLHCLVNKHCPHYF 461


>SB_59772| Best HMM Match : dDENN (HMM E-Value=1.6e-24)
          Length = 423

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 4/78 (5%)
 Frame = -2

Query: 398 YIPLAPNSLR---DSPLPEDSHPAAAGSRLRASTS-PRNCSVHCV*RSKGDCLSVPEIRE 231
           Y+P+ P +L+   D+P+P       A    +A+   P   S+  V       LS  ++ E
Sbjct: 25  YVPILPAALQHFLDAPVPFIMGLYCASEDFKANLQLPSEASLCLVDIDNCKVLSPEDLPE 84

Query: 230 FPANEDLVQARHHQLEQF 177
           FP  +DL++     +E+F
Sbjct: 85  FPNKQDLIEELLETIEKF 102


>SB_12635| Best HMM Match : Chlam_PMP (HMM E-Value=0.018)
          Length = 3561

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = -1

Query: 717  QDLL*VRTGRYYRPAYF-CREAVTRFGLKGGAALVTIRETLEL 592
            Q L+ V  G  + PA+F CR   +  GL GG   +T++ TL +
Sbjct: 1373 QPLVGVAYGHVFEPAHFGCRGGGSGGGLGGGVINITVQGTLRI 1415


>SB_11982| Best HMM Match : GST_N (HMM E-Value=7.9e-15)
          Length = 221

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = +3

Query: 81  MNAIASYFIKTLFLFEIVKVDDITFWSKNSPSKLFKLMV 197
           MN  A+Y I TLFLF++   D I F + ++   +F  M+
Sbjct: 154 MNEQATYQITTLFLFQLTYADIILFSTSDTFESMFPGML 192


>SB_57649| Best HMM Match : RPE65 (HMM E-Value=9)
          Length = 309

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 17/44 (38%), Positives = 25/44 (56%)
 Frame = +3

Query: 630 RPSSRNALLLHGRNRRGGNTYPCGLTRGPATSRKLSQYIVCCVT 761
           RP++ ++ L H  + + G  Y  G TRGP  S K + Y+V  VT
Sbjct: 28  RPTTIHSSLAHPHSAQDGTFYNFGATRGP--SPKYNIYMVPPVT 69


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,471,853
Number of Sequences: 59808
Number of extensions: 477458
Number of successful extensions: 1054
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 993
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1053
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2227723674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)