Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10510
         (804 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC107110-1|AAI07111.1|  176|Homo sapiens TMEM95 protein protein.       32   2.8  
U77476-1|AAB84361.1|  295|Homo sapiens DAZLA protein protein.          31   4.9  
U66726-1|AAB39935.1|  295|Homo sapiens germline specific RNA bin...    31   4.9  
U66078-1|AAB63596.1|  295|Homo sapiens DAZLA protein.                  31   4.9  
U65918-1|AAC50813.1|  295|Homo sapiens RNA binding protein protein.    31   4.9  
BC027595-1|AAH27595.1|  295|Homo sapiens deleted in azoospermia-...    31   4.9  
AB065537-1|BAC05783.1|  239|Homo sapiens seven transmembrane hel...    30   8.5  

>BC107110-1|AAI07111.1|  176|Homo sapiens TMEM95 protein protein.
          Length = 176

 Score = 31.9 bits (69), Expect = 2.8
 Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
 Frame = -2

Query: 416 VRESSPYIPLAPNSLRDSPLPEDSHPAAAGSRLRASTSPRNCSVHCV*RSKGDCLSV-PE 240
           ++E+   +P   + LR + LPE +  A      R ST+  NCS  C    KG  +S  P 
Sbjct: 77  IKEAVSSLPSYWSWLRKTKLPEYTREALCPPACRGSTTLYNCST-C----KGTEVSCWPR 131

Query: 239 IREFPANEDLVQAR 198
            R FP ++DL +A+
Sbjct: 132 KRCFPGSQDLWEAK 145


>U77476-1|AAB84361.1|  295|Homo sapiens DAZLA protein protein.
          Length = 295

 Score = 31.1 bits (67), Expect = 4.9
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = +1

Query: 613 SYKGCPALQAETRYCFTAEIGGAVIPTRADSQEVLPPAGN 732
           SY   PA  A   +C   + G  V+P      E  PP+GN
Sbjct: 202 SYVVPPAYSAVNYHCNEVDPGAEVVPNECSVHEATPPSGN 241


>U66726-1|AAB39935.1|  295|Homo sapiens germline specific RNA
           binding protein protein.
          Length = 295

 Score = 31.1 bits (67), Expect = 4.9
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = +1

Query: 613 SYKGCPALQAETRYCFTAEIGGAVIPTRADSQEVLPPAGN 732
           SY   PA  A   +C   + G  V+P      E  PP+GN
Sbjct: 202 SYVVPPAYSAVNYHCNEVDPGAEVVPNECSVHEATPPSGN 241


>U66078-1|AAB63596.1|  295|Homo sapiens DAZLA protein.
          Length = 295

 Score = 31.1 bits (67), Expect = 4.9
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = +1

Query: 613 SYKGCPALQAETRYCFTAEIGGAVIPTRADSQEVLPPAGN 732
           SY   PA  A   +C   + G  V+P      E  PP+GN
Sbjct: 202 SYVVPPAYSAVNYHCNEVDPGAEVVPNECSVHEATPPSGN 241


>U65918-1|AAC50813.1|  295|Homo sapiens RNA binding protein protein.
          Length = 295

 Score = 31.1 bits (67), Expect = 4.9
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = +1

Query: 613 SYKGCPALQAETRYCFTAEIGGAVIPTRADSQEVLPPAGN 732
           SY   PA  A   +C   + G  V+P      E  PP+GN
Sbjct: 202 SYVVPPAYSAVNYHCNEVDPGAEVVPNECSVHEATPPSGN 241


>BC027595-1|AAH27595.1|  295|Homo sapiens deleted in
           azoospermia-like protein.
          Length = 295

 Score = 31.1 bits (67), Expect = 4.9
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = +1

Query: 613 SYKGCPALQAETRYCFTAEIGGAVIPTRADSQEVLPPAGN 732
           SY   PA  A   +C   + G  V+P      E  PP+GN
Sbjct: 202 SYVVPPAYSAVNYHCNEVDPGAEVVPNECSVHEATPPSGN 241


>AB065537-1|BAC05783.1|  239|Homo sapiens seven transmembrane helix
           receptor protein.
          Length = 239

 Score = 30.3 bits (65), Expect = 8.5
 Identities = 20/75 (26%), Positives = 36/75 (48%)
 Frame = +3

Query: 33  LRPALRLMKKLRDAQGMNAIASYFIKTLFLFEIVKVDDITFWSKNSPSKLFKLMVSRLHE 212
           LR  LRL  +   A+ ++   S+F+  LF   I+ V  +T  +K   S    ++++ LH 
Sbjct: 150 LRAVLRLKAEGAVAKALSTCGSHFMLILFFSTILLVFVLTHVAKKKVSPDVPVLLNVLHH 209

Query: 213 VLVSGKLPYFWNRET 257
           V+ +   P  +   T
Sbjct: 210 VIPAALNPIIYGVRT 224


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,115,844
Number of Sequences: 237096
Number of extensions: 2312380
Number of successful extensions: 5173
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4896
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5172
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9924838204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)