Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10510
         (804 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    23   3.3  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    22   5.8  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    22   5.8  

>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 15/73 (20%), Positives = 26/73 (35%)
 Frame = +2

Query: 2   GEALDAQDQ*SATSLATDEEVERRARHERDRQLLHQNIVSV*NSQS*RHHVLEQEQSFET 181
           G  LD  D           ++  +  H + +Q  HQ+     + Q+   H++ Q+Q    
Sbjct: 152 GSVLDGPDSPPLVESQMHHQMHTQHPHMQPQQGQHQSQAQQQHLQAHEQHMMYQQQQQSQ 211

Query: 182 VQVDGVSPARGPR 220
                  P   PR
Sbjct: 212 AASQQSQPGMHPR 224


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 226 GNSLISGTERQSPLERQTQ 282
           G+  +S T + S +ERQTQ
Sbjct: 400 GSMTVSVTSKPSTMERQTQ 418


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -3

Query: 145 SSTLTISNRNNVLMK 101
           S T+ I+NRNN  MK
Sbjct: 484 SYTIVINNRNNTSMK 498



 Score = 21.8 bits (44), Expect = 7.7
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = -3

Query: 205 RRDTINLNSFEGLFLLQNVMSSTLTISNRN 116
           R + I L    G+ +L N+M +++   N+N
Sbjct: 330 RGERIQLTEKNGIDVLGNIMEASILSPNQN 359


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 213,148
Number of Sequences: 438
Number of extensions: 4279
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25489170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)