Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10510
         (804 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g14140.1 68417.m02181 DNA (cytosine-5-)-methyltransferase (ME...    29   2.7  
At4g08990.1 68417.m01485 DNA (cytosine-5-)-methyltransferase, pu...    29   2.7  
At5g67150.1 68418.m08465 transferase family protein similar to a...    29   3.6  
At1g29170.1 68414.m03569 expressed protein ; expression supporte...    28   6.3  

>At4g14140.1 68417.m02181 DNA (cytosine-5-)-methyltransferase (METII)
            nearly identical to cytosine-5 methyltransferase (METII)
            [Arabidopsis thaliana] GI:6523846
          Length = 1519

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
 Frame = -1

Query: 687  YYRPAYFCREAVTRFGL--KGGAALVTIRETLELTSQGEWRIYVVDVYGLQ*P 535
            Y+RP YF  E V +F    KG    +T+   LE+  Q  + I     YG+  P
Sbjct: 1214 YFRPKYFLLENVKKFVTYNKGRTFQLTMASLLEMGYQVRFGILEAGTYGVSQP 1266


>At4g08990.1 68417.m01485 DNA (cytosine-5-)-methyltransferase,
            putative strong similarity to cytosine-5
            methyltransferase (METII) [Arabidopsis thaliana]
            GI:6523846; contains Pfam profiles PF01426: BAH domain,
            PF00145: C-5 cytosine-specific DNA methylase
          Length = 1512

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
 Frame = -1

Query: 687  YYRPAYFCREAVTRFGL--KGGAALVTIRETLELTSQGEWRIYVVDVYGLQ*P 535
            Y+RP YF  E V +F    KG    +T+   LE+  Q  + I     YG+  P
Sbjct: 1207 YFRPKYFLLENVKKFVTYNKGRTFQLTMASLLEIGYQVRFGILEAGTYGVSQP 1259


>At5g67150.1 68418.m08465 transferase family protein similar to
           anthranilate N-hydroxycinnamoyl/benzoyltransferase,
           Dianthus caryophyllus [gi:2239091]; contains Pfam
           transferase family domain PF002458
          Length = 448

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -2

Query: 122 QKQCFDEVTGDRVHALRVSQLLHQSQGWSQI 30
           +K+CF  V G       V+++LH   GW+ +
Sbjct: 308 EKECFGNVVGFATVTTTVAEMLHNGLGWAAL 338


>At1g29170.1 68414.m03569 expressed protein ; expression supported
           by MPSS
          Length = 1016

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 16/48 (33%), Positives = 21/48 (43%)
 Frame = -1

Query: 522 WAVSSPPIYAIKIK*KRNISLIVSRLLLKHDHSQSRERIFSLYSFSSE 379
           W  SSPP+  +KI      +L  SRL LK     +    FS +    E
Sbjct: 729 WITSSPPLQHMKISLNPADTLQASRLKLKFSDGDNTYNTFSSFQLLPE 776


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,284,040
Number of Sequences: 28952
Number of extensions: 325307
Number of successful extensions: 881
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 849
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 881
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1824072800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)