Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10508
         (498 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g04920.1 68416.m00534 40S ribosomal protein S24 (RPS24A) simi...   103   5e-23
At5g28060.1 68418.m03382 40S ribosomal protein S24 (RPS24B) 40S ...   101   4e-22
At4g17410.1 68417.m02607 expressed protein                             29   1.7  
At5g45220.1 68418.m05550 Toll-Interleukin-Resistance (TIR) domai...    29   2.3  
At5g26850.1 68418.m03203 expressed protein                             28   4.0  
At1g12360.1 68414.m01428 cytokinesis-related Sec1 protein (KEULE...    27   5.3  
At5g52700.1 68418.m06542 heavy-metal-associated domain-containin...    27   9.3  

>At3g04920.1 68416.m00534 40S ribosomal protein S24 (RPS24A) similar
           to ribosomal protein S19 GB:445612 [Solanum tuberosum]
           and similar to ribosomal protein S24 GB:4506703 [Homo
           sapiens]
          Length = 133

 Score =  103 bits (248), Expect = 5e-23
 Identities = 48/72 (66%), Positives = 60/72 (83%), Gaps = 1/72 (1%)
 Frame = +3

Query: 42  MSEGTATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKV-TPDVVFVF 218
           M+E   TIRTRKFMTNRLL+RKQ V DVLHPG+  VSK E++EKLA+MY+V  P+ +FVF
Sbjct: 1   MAEKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVF 60

Query: 219 GFKTNFGGGKST 254
            F+T+FGGGKS+
Sbjct: 61  KFRTHFGGGKSS 72



 Score = 68.5 bits (160), Expect = 2e-12
 Identities = 32/48 (66%), Positives = 38/48 (79%)
 Frame = +2

Query: 257 FALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVRG 400
           F LIYDT++ AKKFEPK+RL R+GL  K   +RKQ KERKNR KK+RG
Sbjct: 74  FGLIYDTVESAKKFEPKYRLIRNGLDTKIEKSRKQIKERKNRAKKIRG 121


>At5g28060.1 68418.m03382 40S ribosomal protein S24 (RPS24B) 40S
           ribosomal protein S19, Cyanophora paradoxa,
           EMBL:CPA245654
          Length = 133

 Score =  101 bits (241), Expect = 4e-22
 Identities = 47/72 (65%), Positives = 58/72 (80%), Gaps = 1/72 (1%)
 Frame = +3

Query: 42  MSEGTATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKV-TPDVVFVF 218
           M+E   TIRTR FMTNRLLARKQ V DVLHPG+  VSK E++EKLA+MY+V  P+ +F F
Sbjct: 1   MAEKAVTIRTRNFMTNRLLARKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFCF 60

Query: 219 GFKTNFGGGKST 254
            F+T+FGGGKS+
Sbjct: 61  KFRTHFGGGKSS 72



 Score = 66.9 bits (156), Expect = 7e-12
 Identities = 31/48 (64%), Positives = 38/48 (79%)
 Frame = +2

Query: 257 FALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVRG 400
           + LIYDT++ AKKFEPK+RL R+GL  K   +RKQ KERKNR KK+RG
Sbjct: 74  YGLIYDTVENAKKFEPKYRLIRNGLDTKIEKSRKQIKERKNRAKKIRG 121


>At4g17410.1 68417.m02607 expressed protein 
          Length = 744

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 14/27 (51%), Positives = 15/27 (55%)
 Frame = -3

Query: 277 CVVDQSESVDLPPPKFVLKPNTNTTSG 197
           C V   ESV  PPPK  L P T+  SG
Sbjct: 282 CQVQDMESVRCPPPK-ALSPTTSAASG 307


>At5g45220.1 68418.m05550 Toll-Interleukin-Resistance (TIR)
           domain-containing protein domain signature TIR exists,
           suggestive of a disease resistance protein.
          Length = 546

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = -3

Query: 271 VDQSESVDLPPPKFVLKPNTNTTSGVTLYILASFSRISVLLTVGFPGC 128
           +  S SV+LPP   V      +  G   +++ +  + ++ + VGF GC
Sbjct: 4   LSSSSSVELPPQHTVFILYNGSRMGFIYHLIMALEKKNINVFVGFNGC 51


>At5g26850.1 68418.m03203 expressed protein
          Length = 919

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = +3

Query: 81  MTNRLLARKQMVCDVLHPGKPTVSKTEIRE-KLAKMYKVTPDVVFVFGFKTN 233
           M +++     ++ D++    P +SK E  + K+  + + TPD  F+FG + N
Sbjct: 702 MRSKVELSNTIITDIVAKNLPKLSKLEEADVKMQILEQFTPDDAFMFGSRPN 753


>At1g12360.1 68414.m01428 cytokinesis-related Sec1 protein (KEULE)
           similar to cytokinesis-related Sec1 protein KEULE
           [Arabidopsis thaliana] gi|12659318|gb|AAK01291; contains
           Pfam domain, PF00995: Sec1 family
          Length = 666

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 16/41 (39%), Positives = 24/41 (58%)
 Frame = +2

Query: 248 VN*FALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKE 370
           VN  +L+   +D AKK  P     +  L++KKR  RK+R+E
Sbjct: 468 VNNMSLLGSAVD-AKKNTPGGFTLKFDLHKKKRAVRKERQE 507


>At5g52700.1 68418.m06542 heavy-metal-associated domain-containing
           protein   contains Pfam profile PF00403:
           Heavy-metal-associated domain
          Length = 370

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
 Frame = +1

Query: 229 QTSEVASQL-IRFDLRHTRSGQEVRAQAQVSPPRPVR-EEEAHAQTA*RT*EQNEEGPRY 402
           QT  + S     F++++  S   V A+ +V PP PVR     +A    +   Q  E P Y
Sbjct: 194 QTPNIGSSNGTNFNMKNALSSFRVPARVRVPPPPPVRPASPVYAAGRGKKFNQGNEFPTY 253

Query: 403 QE 408
           ++
Sbjct: 254 KQ 255


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,240,142
Number of Sequences: 28952
Number of extensions: 205605
Number of successful extensions: 601
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 598
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)