Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10503
         (838 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    25   0.98 
EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    23   4.0  
AM292343-1|CAL23155.2|  301|Tribolium castaneum gustatory recept...    22   6.9  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 24.6 bits (51), Expect = 0.98
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = -2

Query: 309  PRQTLRPRRRWPPGTVGTRDKVVHVALSLSELHL-VHALAGVPM 181
            P  TL PR R     V + +K + V+ +   LHL   +  G PM
Sbjct: 1478 PSDTLNPRTRGEKPIVPSAEKFIEVSSNSITLHLSAWSDGGCPM 1521


>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +3

Query: 477 NNLGSTRYVAVQVVFTFPVFFLDYEGQLWNVYCSKQ 584
           +N+ STR   ++    FP F+ D+E Q +   C  Q
Sbjct: 18  DNVSSTRTKYLRT--NFPNFYNDFEVQRYTWKCENQ 51


>AM292343-1|CAL23155.2|  301|Tribolium castaneum gustatory receptor
           candidate 22 protein.
          Length = 301

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +1

Query: 352 TLSSLY*ITPFPPLAFREIHNTFAFRIYIVTSI 450
           T+  L+ +        REI+  FAF++ + TS+
Sbjct: 132 TIKKLFNLHKILVKVVREINGIFAFQVLMCTSM 164


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,553
Number of Sequences: 336
Number of extensions: 3415
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23036718
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)