Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10503
(838 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_47198| Best HMM Match : Tubulin (HMM E-Value=0) 181 6e-46
SB_39308| Best HMM Match : Tubulin (HMM E-Value=0) 181 6e-46
SB_17879| Best HMM Match : Tubulin (HMM E-Value=0) 181 6e-46
SB_44780| Best HMM Match : 7tm_1 (HMM E-Value=1.2e-34) 167 1e-41
SB_17651| Best HMM Match : Tubulin_C (HMM E-Value=4.7e-28) 167 1e-41
SB_25311| Best HMM Match : Tubulin (HMM E-Value=0) 131 8e-31
SB_17880| Best HMM Match : Tubulin_C (HMM E-Value=0) 116 2e-26
SB_48961| Best HMM Match : Tubulin (HMM E-Value=0) 66 3e-11
SB_37573| Best HMM Match : No HMM Matches (HMM E-Value=.) 66 3e-11
SB_22193| Best HMM Match : No HMM Matches (HMM E-Value=.) 66 3e-11
SB_22192| Best HMM Match : No HMM Matches (HMM E-Value=.) 66 3e-11
SB_22191| Best HMM Match : No HMM Matches (HMM E-Value=.) 66 3e-11
SB_22190| Best HMM Match : No HMM Matches (HMM E-Value=.) 66 3e-11
SB_19437| Best HMM Match : Tubulin (HMM E-Value=0) 66 3e-11
SB_2674| Best HMM Match : Tubulin (HMM E-Value=0) 66 3e-11
SB_51156| Best HMM Match : Tubulin_C (HMM E-Value=0) 66 3e-11
SB_23895| Best HMM Match : Tubulin_C (HMM E-Value=0) 66 3e-11
SB_2003| Best HMM Match : Tubulin (HMM E-Value=0) 66 3e-11
SB_51150| Best HMM Match : Tubulin_C (HMM E-Value=0) 62 5e-10
SB_42897| Best HMM Match : No HMM Matches (HMM E-Value=.) 60 2e-09
SB_47795| Best HMM Match : Tubulin_C (HMM E-Value=0.24) 58 9e-09
SB_5512| Best HMM Match : Tubulin (HMM E-Value=0) 56 4e-08
SB_40336| Best HMM Match : Tubulin_C (HMM E-Value=1.3e-32) 53 3e-07
SB_57880| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 8e-04
SB_18322| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.7
SB_9492| Best HMM Match : Rho_N (HMM E-Value=2.1e-12) 29 4.7
SB_2016| Best HMM Match : HEAT (HMM E-Value=8.6e-07) 28 8.2
>SB_47198| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 446
Score = 181 bits (441), Expect = 6e-46
Identities = 83/84 (98%), Positives = 84/84 (100%)
Frame = +1
Query: 1 KNSSYFVEWIPNNVKTAVCDIPPRGLKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFL 180
KNSSYFVEWIPNNVKTAVCDIPPRGLKM+ATFIGNSTAIQELFKRISEQFTAMFRRKAFL
Sbjct: 336 KNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFL 395
Query: 181 HWYTGEGMDEMEFTEAESNMNDLV 252
HWYTGEGMDEMEFTEAESNMNDLV
Sbjct: 396 HWYTGEGMDEMEFTEAESNMNDLV 419
>SB_39308| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 391
Score = 181 bits (441), Expect = 6e-46
Identities = 83/84 (98%), Positives = 84/84 (100%)
Frame = +1
Query: 1 KNSSYFVEWIPNNVKTAVCDIPPRGLKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFL 180
KNSSYFVEWIPNNVKTAVCDIPPRGLKM+ATFIGNSTAIQELFKRISEQFTAMFRRKAFL
Sbjct: 281 KNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFL 340
Query: 181 HWYTGEGMDEMEFTEAESNMNDLV 252
HWYTGEGMDEMEFTEAESNMNDLV
Sbjct: 341 HWYTGEGMDEMEFTEAESNMNDLV 364
>SB_17879| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 446
Score = 181 bits (441), Expect = 6e-46
Identities = 83/84 (98%), Positives = 84/84 (100%)
Frame = +1
Query: 1 KNSSYFVEWIPNNVKTAVCDIPPRGLKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFL 180
KNSSYFVEWIPNNVKTAVCDIPPRGLKM+ATFIGNSTAIQELFKRISEQFTAMFRRKAFL
Sbjct: 336 KNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFL 395
Query: 181 HWYTGEGMDEMEFTEAESNMNDLV 252
HWYTGEGMDEMEFTEAESNMNDLV
Sbjct: 396 HWYTGEGMDEMEFTEAESNMNDLV 419
>SB_44780| Best HMM Match : 7tm_1 (HMM E-Value=1.2e-34)
Length = 747
Score = 167 bits (405), Expect = 1e-41
Identities = 73/84 (86%), Positives = 80/84 (95%)
Frame = +1
Query: 1 KNSSYFVEWIPNNVKTAVCDIPPRGLKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFL 180
KNS +FVEWIPNNVKT VCDI P+GLKMAATF+GN+TAIQELFKR+ EQFTAMFRRKAFL
Sbjct: 101 KNSPFFVEWIPNNVKTTVCDIAPKGLKMAATFVGNNTAIQELFKRVGEQFTAMFRRKAFL 160
Query: 181 HWYTGEGMDEMEFTEAESNMNDLV 252
HWYTGEGMDEMEFTEAESNM+DL+
Sbjct: 161 HWYTGEGMDEMEFTEAESNMHDLI 184
>SB_17651| Best HMM Match : Tubulin_C (HMM E-Value=4.7e-28)
Length = 271
Score = 167 bits (405), Expect = 1e-41
Identities = 73/84 (86%), Positives = 80/84 (95%)
Frame = +1
Query: 1 KNSSYFVEWIPNNVKTAVCDIPPRGLKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFL 180
KNS +FVEWIPNNVKT VCDI P+GLKMAATF+GN+TAIQELFKR+ EQFTAMFRRKAFL
Sbjct: 163 KNSPFFVEWIPNNVKTTVCDIAPKGLKMAATFVGNNTAIQELFKRVGEQFTAMFRRKAFL 222
Query: 181 HWYTGEGMDEMEFTEAESNMNDLV 252
HWYTGEGMDEMEFTEAESNM+DL+
Sbjct: 223 HWYTGEGMDEMEFTEAESNMHDLI 246
>SB_25311| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 629
Score = 131 bits (316), Expect = 8e-31
Identities = 58/78 (74%), Positives = 67/78 (85%)
Frame = +1
Query: 4 NSSYFVEWIPNNVKTAVCDIPPRGLKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLH 183
+SS FVEWIPNN+KTAVCD+PP GLK AATF+ NSTAIQE F+R +EQF AMFRR+AFLH
Sbjct: 156 HSSSFVEWIPNNMKTAVCDVPPVGLKNAATFLYNSTAIQEAFRRFTEQFAAMFRRRAFLH 215
Query: 184 WYTGEGMDEMEFTEAESN 237
WYT EGMD +EFTE + N
Sbjct: 216 WYTTEGMDPLEFTEIKRN 233
>SB_17880| Best HMM Match : Tubulin_C (HMM E-Value=0)
Length = 375
Score = 116 bits (279), Expect = 2e-26
Identities = 50/82 (60%), Positives = 65/82 (79%)
Frame = +1
Query: 7 SSYFVEWIPNNVKTAVCDIPPRGLKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHW 186
SS FV+WIPNN K AVCD+PP +KM+A+ I ++TAIQELFKRI + MFRR+AFLHW
Sbjct: 243 SSLFVDWIPNNGKVAVCDVPPHDMKMSASCISSNTAIQELFKRIRLHYKLMFRRRAFLHW 302
Query: 187 YTGEGMDEMEFTEAESNMNDLV 252
YT EGMD +F EA++++ DL+
Sbjct: 303 YTEEGMDSQQFEEADNDILDLI 324
>SB_48961| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 536
Score = 66.5 bits (155), Expect = 3e-11
Identities = 31/88 (35%), Positives = 49/88 (55%), Gaps = 8/88 (9%)
Frame = +1
Query: 1 KNSSYFVEWIPNNVKTAVCDIPPR--------GLKMAATFIGNSTAIQELFKRISEQFTA 156
K + FV+W P K + PP ++ A + N+TAI E + R+ +F
Sbjct: 322 KRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDL 381
Query: 157 MFRRKAFLHWYTGEGMDEMEFTEAESNM 240
M+ ++AF+HWY GEGM+E EF+EA ++
Sbjct: 382 MYAKRAFVHWYVGEGMEEGEFSEAREDL 409
>SB_37573| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 389
Score = 66.5 bits (155), Expect = 3e-11
Identities = 31/88 (35%), Positives = 49/88 (55%), Gaps = 8/88 (9%)
Frame = +1
Query: 1 KNSSYFVEWIPNNVKTAVCDIPPR--------GLKMAATFIGNSTAIQELFKRISEQFTA 156
K + FV+W P K + PP ++ A + N+TAI E + R+ +F
Sbjct: 275 KRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDL 334
Query: 157 MFRRKAFLHWYTGEGMDEMEFTEAESNM 240
M+ ++AF+HWY GEGM+E EF+EA ++
Sbjct: 335 MYAKRAFVHWYVGEGMEEGEFSEAREDL 362
>SB_22193| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1231
Score = 66.5 bits (155), Expect = 3e-11
Identities = 31/88 (35%), Positives = 49/88 (55%), Gaps = 8/88 (9%)
Frame = +1
Query: 1 KNSSYFVEWIPNNVKTAVCDIPPR--------GLKMAATFIGNSTAIQELFKRISEQFTA 156
K + FV+W P K + PP ++ A + N+TAI E + R+ +F
Sbjct: 709 KKTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDL 768
Query: 157 MFRRKAFLHWYTGEGMDEMEFTEAESNM 240
M+ ++AF+HWY GEGM+E EF+EA ++
Sbjct: 769 MYAKRAFVHWYVGEGMEEGEFSEAREDL 796
Score = 66.5 bits (155), Expect = 3e-11
Identities = 31/88 (35%), Positives = 49/88 (55%), Gaps = 8/88 (9%)
Frame = +1
Query: 1 KNSSYFVEWIPNNVKTAVCDIPPR--------GLKMAATFIGNSTAIQELFKRISEQFTA 156
K + FV+W P K + PP ++ A + N+TAI E + R+ +F
Sbjct: 1118 KRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDL 1177
Query: 157 MFRRKAFLHWYTGEGMDEMEFTEAESNM 240
M+ ++AF+HWY GEGM+E EF+EA ++
Sbjct: 1178 MYAKRAFVHWYVGEGMEEGEFSEAREDL 1205
>SB_22192| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 452
Score = 66.5 bits (155), Expect = 3e-11
Identities = 31/88 (35%), Positives = 49/88 (55%), Gaps = 8/88 (9%)
Frame = +1
Query: 1 KNSSYFVEWIPNNVKTAVCDIPPR--------GLKMAATFIGNSTAIQELFKRISEQFTA 156
K + FV+W P K + PP ++ A + N+TAI E + R+ +F
Sbjct: 338 KRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDL 397
Query: 157 MFRRKAFLHWYTGEGMDEMEFTEAESNM 240
M+ ++AF+HWY GEGM+E EF+EA ++
Sbjct: 398 MYAKRAFVHWYVGEGMEEGEFSEAREDL 425
>SB_22191| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 865
Score = 66.5 bits (155), Expect = 3e-11
Identities = 31/88 (35%), Positives = 49/88 (55%), Gaps = 8/88 (9%)
Frame = +1
Query: 1 KNSSYFVEWIPNNVKTAVCDIPPR--------GLKMAATFIGNSTAIQELFKRISEQFTA 156
K + FV+W P K + PP ++ A + N+TAI E + R+ +F
Sbjct: 323 KRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDL 382
Query: 157 MFRRKAFLHWYTGEGMDEMEFTEAESNM 240
M+ ++AF+HWY GEGM+E EF+EA ++
Sbjct: 383 MYAKRAFVHWYVGEGMEEGEFSEAREDL 410
Score = 66.5 bits (155), Expect = 3e-11
Identities = 31/88 (35%), Positives = 49/88 (55%), Gaps = 8/88 (9%)
Frame = +1
Query: 1 KNSSYFVEWIPNNVKTAVCDIPPR--------GLKMAATFIGNSTAIQELFKRISEQFTA 156
K + FV+W P K + PP ++ A + N+TAI E + R+ +F
Sbjct: 754 KRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDL 813
Query: 157 MFRRKAFLHWYTGEGMDEMEFTEAESNM 240
M+ ++AF+HWY GEGM+E EF+EA ++
Sbjct: 814 MYAKRAFVHWYVGEGMEEGEFSEAREDL 841
>SB_22190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 417
Score = 66.5 bits (155), Expect = 3e-11
Identities = 31/88 (35%), Positives = 49/88 (55%), Gaps = 8/88 (9%)
Frame = +1
Query: 1 KNSSYFVEWIPNNVKTAVCDIPPR--------GLKMAATFIGNSTAIQELFKRISEQFTA 156
K + FV+W P K + PP ++ A + N+TAI E + R+ +F
Sbjct: 303 KRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDL 362
Query: 157 MFRRKAFLHWYTGEGMDEMEFTEAESNM 240
M+ ++AF+HWY GEGM+E EF+EA ++
Sbjct: 363 MYAKRAFVHWYVGEGMEEGEFSEAREDL 390
>SB_19437| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 885
Score = 66.5 bits (155), Expect = 3e-11
Identities = 31/88 (35%), Positives = 49/88 (55%), Gaps = 8/88 (9%)
Frame = +1
Query: 1 KNSSYFVEWIPNNVKTAVCDIPPR--------GLKMAATFIGNSTAIQELFKRISEQFTA 156
K + FV+W P K + PP ++ A + N+TAI E + R+ +F
Sbjct: 771 KRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDL 830
Query: 157 MFRRKAFLHWYTGEGMDEMEFTEAESNM 240
M+ ++AF+HWY GEGM+E EF+EA ++
Sbjct: 831 MYAKRAFVHWYVGEGMEEGEFSEAREDL 858
Score = 66.1 bits (154), Expect = 3e-11
Identities = 30/88 (34%), Positives = 49/88 (55%), Gaps = 8/88 (9%)
Frame = +1
Query: 1 KNSSYFVEWIPNNVKTAVCDIPPR--------GLKMAATFIGNSTAIQELFKRISEQFTA 156
K + FV+W P K + PP ++ A + N+TA+ E + R+ +F
Sbjct: 338 KRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAVAEAWARLDHKFDL 397
Query: 157 MFRRKAFLHWYTGEGMDEMEFTEAESNM 240
M+ ++AF+HWY GEGM+E EF+EA ++
Sbjct: 398 MYAKRAFVHWYVGEGMEEGEFSEAREDL 425
>SB_2674| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 1036
Score = 66.5 bits (155), Expect = 3e-11
Identities = 31/88 (35%), Positives = 49/88 (55%), Gaps = 8/88 (9%)
Frame = +1
Query: 1 KNSSYFVEWIPNNVKTAVCDIPPR--------GLKMAATFIGNSTAIQELFKRISEQFTA 156
K + FV+W P K + PP ++ A + N+TAI E + R+ +F
Sbjct: 923 KRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDL 982
Query: 157 MFRRKAFLHWYTGEGMDEMEFTEAESNM 240
M+ ++AF+HWY GEGM+E EF+EA ++
Sbjct: 983 MYAKRAFVHWYVGEGMEEGEFSEAREDL 1010
>SB_51156| Best HMM Match : Tubulin_C (HMM E-Value=0)
Length = 377
Score = 66.5 bits (155), Expect = 3e-11
Identities = 31/88 (35%), Positives = 49/88 (55%), Gaps = 8/88 (9%)
Frame = +1
Query: 1 KNSSYFVEWIPNNVKTAVCDIPPR--------GLKMAATFIGNSTAIQELFKRISEQFTA 156
K + FV+W P K + PP ++ A + N+TAI E + R+ +F
Sbjct: 263 KRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDL 322
Query: 157 MFRRKAFLHWYTGEGMDEMEFTEAESNM 240
M+ ++AF+HWY GEGM+E EF+EA ++
Sbjct: 323 MYAKRAFVHWYVGEGMEEGEFSEAREDL 350
>SB_23895| Best HMM Match : Tubulin_C (HMM E-Value=0)
Length = 250
Score = 66.5 bits (155), Expect = 3e-11
Identities = 31/88 (35%), Positives = 49/88 (55%), Gaps = 8/88 (9%)
Frame = +1
Query: 1 KNSSYFVEWIPNNVKTAVCDIPPR--------GLKMAATFIGNSTAIQELFKRISEQFTA 156
K + FV+W P K + PP ++ A + N+TAI E + R+ +F
Sbjct: 136 KRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDL 195
Query: 157 MFRRKAFLHWYTGEGMDEMEFTEAESNM 240
M+ ++AF+HWY GEGM+E EF+EA ++
Sbjct: 196 MYAKRAFVHWYVGEGMEEGEFSEAREDL 223
>SB_2003| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 451
Score = 66.5 bits (155), Expect = 3e-11
Identities = 31/88 (35%), Positives = 49/88 (55%), Gaps = 8/88 (9%)
Frame = +1
Query: 1 KNSSYFVEWIPNNVKTAVCDIPPR--------GLKMAATFIGNSTAIQELFKRISEQFTA 156
K + FV+W P K + PP ++ A + N+TAI E + R+ +F
Sbjct: 338 KRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDL 397
Query: 157 MFRRKAFLHWYTGEGMDEMEFTEAESNM 240
M+ ++AF+HWY GEGM+E EF+EA ++
Sbjct: 398 MYAKRAFVHWYVGEGMEEGEFSEAREDL 425
>SB_51150| Best HMM Match : Tubulin_C (HMM E-Value=0)
Length = 232
Score = 62.1 bits (144), Expect = 5e-10
Identities = 28/88 (31%), Positives = 49/88 (55%), Gaps = 8/88 (9%)
Frame = +1
Query: 1 KNSSYFVEWIPNNVKTAVCDIPPRGL--------KMAATFIGNSTAIQELFKRISEQFTA 156
K + FV+W P K + P + + + + N+TAI + + R++ +F
Sbjct: 136 KRTIQFVDWCPTGFKVGINYQQPTAVPGGDLAKVQRSVCMLSNTTAIADAWARLNHKFDL 195
Query: 157 MFRRKAFLHWYTGEGMDEMEFTEAESNM 240
M+ ++AF+HWY GEGM+E EF+EA ++
Sbjct: 196 MYAKRAFVHWYVGEGMEEGEFSEAREDL 223
>SB_42897| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 602
Score = 60.1 bits (139), Expect = 2e-09
Identities = 23/55 (41%), Positives = 38/55 (69%)
Frame = +1
Query: 76 LKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 240
++ A + N+TAI E + R+ +F M+ ++AF+HWY GEGM+E EF+EA ++
Sbjct: 523 VQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 577
>SB_47795| Best HMM Match : Tubulin_C (HMM E-Value=0.24)
Length = 149
Score = 58.0 bits (134), Expect = 9e-09
Identities = 21/55 (38%), Positives = 39/55 (70%)
Frame = +1
Query: 76 LKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 240
++ + + N+TAI + + R++ +F M+ ++AF+HWY GEGM+E EF+EA ++
Sbjct: 69 VQRSVCMLSNTTAIADAWARLNHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 123
>SB_5512| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 365
Score = 56.0 bits (129), Expect = 4e-08
Identities = 26/80 (32%), Positives = 42/80 (52%)
Frame = +1
Query: 1 KNSSYFVEWIPNNVKTAVCDIPPRGLKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFL 180
K + F +W P K + PP + + I E + R+ +F M+ ++AF+
Sbjct: 263 KRTFQFGDWCPTGFKVGINSQPPTVVPGGDL----AKPIAEAWARLDHKFDLMYAKRAFV 318
Query: 181 HWYTGEGMDEMEFTEAESNM 240
HWY GEGM+E EF+EA ++
Sbjct: 319 HWYVGEGMEEGEFSEAREDL 338
>SB_40336| Best HMM Match : Tubulin_C (HMM E-Value=1.3e-32)
Length = 488
Score = 53.2 bits (122), Expect = 3e-07
Identities = 23/85 (27%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Frame = +1
Query: 1 KNSSYFVEWIPNNVKTAVCDIPPRGLKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFL 180
K S F+ W KT +C +PP G + + N++ I+ F + ++F +++RKA +
Sbjct: 383 KPSLKFIHWNQEGWKTGLCSVPPVGQPYSLLTLANNSCIKNTFVELKDRFMKLYKRKAHV 442
Query: 181 HWYTG-EGMDEMEFTEAESNMNDLV 252
H YT +G++ +F + +++ L+
Sbjct: 443 HHYTHVDGLEVGQFDDGLESLSWLI 467
>SB_57880| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 65
Score = 41.5 bits (93), Expect = 8e-04
Identities = 14/27 (51%), Positives = 22/27 (81%)
Frame = +1
Query: 160 FRRKAFLHWYTGEGMDEMEFTEAESNM 240
+ ++AF+HWY GEGM+E EF+EA ++
Sbjct: 13 YAKRAFVHWYVGEGMEEGEFSEAREDL 39
>SB_18322| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 253
Score = 29.9 bits (64), Expect = 2.7
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +1
Query: 403 EIHNTFAFRI-YIVTSIVSDSNMHDKIT*EVHVMSRYRL 516
+IH+T +R +IVT ++ H I+ +H +RYRL
Sbjct: 73 QIHHTSRYRFGFIVTVDIASDPSHQSISPRIHHTNRYRL 111
>SB_9492| Best HMM Match : Rho_N (HMM E-Value=2.1e-12)
Length = 1970
Score = 29.1 bits (62), Expect = 4.7
Identities = 25/72 (34%), Positives = 31/72 (43%)
Frame = -2
Query: 432 NTKSKSIVDLSKGERWKGGYLI*RRERLVKGLSCPRFPAPAPRQTLRPRRRWPPGTVGTR 253
N K K + L+K ER Y RR+ LV L+ P P PR+ L GT+
Sbjct: 9 NLKVKDLKALAK-ERGIPRYYWMRRDELVGALTSTS-PPPPPRRALETAELADVGTLSKP 66
Query: 252 DKVVHVALSLSE 217
D V H SE
Sbjct: 67 DFVSHPEKYFSE 78
>SB_2016| Best HMM Match : HEAT (HMM E-Value=8.6e-07)
Length = 502
Score = 28.3 bits (60), Expect = 8.2
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = -2
Query: 687 NQVQPYKKKDLFPLCDSVTAPRACSAEGLASLRVAVYCNKHSRAALR 547
+++Q L LC SV+ C+ A L ++C + S A LR
Sbjct: 136 SRLQQLASLSLTDLCQSVSGDEGCAVAETAELIALMHCLESSAATLR 182
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,270,272
Number of Sequences: 59808
Number of extensions: 442842
Number of successful extensions: 1485
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 1286
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1469
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2359470773
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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