Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10503
         (838 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex det...    23   2.6  
DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex det...    23   2.6  
DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex det...    23   2.6  
DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex det...    23   2.6  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   8.1  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   8.1  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   8.1  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   8.1  

>DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 9/36 (25%), Positives = 18/36 (50%)
 Frame = +3

Query: 426 SYLYSNFNSFRLQHA**NNLGSTRYVAVQVVFTFPV 533
           +Y YSN+N++   +   NN    +Y  +  +   P+
Sbjct: 88  NYKYSNYNNYNNNNYNNNNYKKLQYYNINYIEQIPI 123


>DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 9/36 (25%), Positives = 18/36 (50%)
 Frame = +3

Query: 426 SYLYSNFNSFRLQHA**NNLGSTRYVAVQVVFTFPV 533
           +Y YSN+N++   +   NN    +Y  +  +   P+
Sbjct: 88  NYKYSNYNNYNNNNYNNNNYKKLQYYNINYIEQIPI 123


>DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 9/36 (25%), Positives = 18/36 (50%)
 Frame = +3

Query: 426 SYLYSNFNSFRLQHA**NNLGSTRYVAVQVVFTFPV 533
           +Y YSN+N++   +   NN    +Y  +  +   P+
Sbjct: 88  NYKYSNYNNYNNNNYNNNNYKKLQYYNINYIEQIPI 123


>DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 9/36 (25%), Positives = 18/36 (50%)
 Frame = +3

Query: 426 SYLYSNFNSFRLQHA**NNLGSTRYVAVQVVFTFPV 533
           +Y YSN+N++   +   NN    +Y  +  +   P+
Sbjct: 88  NYKYSNYNNYNNNNYNNNNYKKLQYYNINYIEQIPI 123


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 10/29 (34%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = -3

Query: 230 SASVNSISSMPSPVYQCKKALR-LNIAVN 147
           +AS NS+ S+P  ++   + LR +++A N
Sbjct: 267 NASYNSLDSLPEGLFASTRDLREIHLAYN 295


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
 Frame = +1

Query: 388 PLAFREIHNTF-AFRIYIVTSIVSDSNMHDKIT*EVHVMSRYRLCLHSRCFSLTTKGSSG 564
           P+   E ++ F   RI IV S+ S S  +D+    +   S  R    +RC+SL +  +S 
Sbjct: 170 PVEENETYDEFDTIRIPIVRSL-SKSPPNDE---GIETDSDRRKGSIARCWSLDSTAASD 225

Query: 565 MFIAVNSYPQRR 600
             I++ ++ Q+R
Sbjct: 226 EDISLTTHQQKR 237


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +1

Query: 373 ITPFPPLAFREIHNTFAFRIYIVTSI 450
           + PFP  AFR+  ++ A+R     S+
Sbjct: 89  LLPFPAAAFRQDVHSAAYRCVASNSV 114


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +1

Query: 373 ITPFPPLAFREIHNTFAFRIYIVTSI 450
           + PFP  AFR+  ++ A+R     S+
Sbjct: 89  LLPFPAAAFRQDVHSAAYRCVASNSV 114


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 209,666
Number of Sequences: 438
Number of extensions: 4476
Number of successful extensions: 15
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26824317
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)