Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10503
(838 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly iden... 174 5e-44
At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) near... 172 3e-43
At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) near... 172 3e-43
At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8) ide... 172 3e-43
At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical t... 172 3e-43
At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly iden... 171 5e-43
At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly iden... 170 9e-43
At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly iden... 169 1e-42
At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly iden... 169 2e-42
At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5) ne... 71 1e-12
At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3) ne... 71 1e-12
At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly ide... 71 1e-12
At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly ide... 71 1e-12
At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2) id... 71 1e-12
At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4) ne... 71 1e-12
At4g15460.1 68417.m02363 glycine-rich protein 29 3.8
At3g19700.1 68416.m02495 leucine-rich repeat transmembrane prote... 28 6.7
At2g24340.1 68415.m02909 hypothetical protein 28 6.7
At1g08370.1 68414.m00926 hydroxyproline-rich glycoprotein family... 28 8.8
>At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly
identical to SP|P29513 Tubulin beta-5 chain {Arabidopsis
thaliana}
Length = 449
Score = 174 bits (424), Expect = 5e-44
Identities = 76/84 (90%), Positives = 84/84 (100%)
Frame = +1
Query: 1 KNSSYFVEWIPNNVKTAVCDIPPRGLKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFL 180
KNSSYFVEWIPNNVK++VCDIPP+GLKMAATF+GNST+IQE+F+R+SEQFTAMFRRKAFL
Sbjct: 337 KNSSYFVEWIPNNVKSSVCDIPPKGLKMAATFVGNSTSIQEMFRRVSEQFTAMFRRKAFL 396
Query: 181 HWYTGEGMDEMEFTEAESNMNDLV 252
HWYTGEGMDEMEFTEAESNMNDLV
Sbjct: 397 HWYTGEGMDEMEFTEAESNMNDLV 420
>At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 172 bits (418), Expect = 3e-43
Identities = 76/84 (90%), Positives = 82/84 (97%)
Frame = +1
Query: 1 KNSSYFVEWIPNNVKTAVCDIPPRGLKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFL 180
KNSSYFVEWIPNNVK+ VCDIPP GLKMA+TFIGNST+IQE+F+R+SEQFTAMFRRKAFL
Sbjct: 336 KNSSYFVEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFL 395
Query: 181 HWYTGEGMDEMEFTEAESNMNDLV 252
HWYTGEGMDEMEFTEAESNMNDLV
Sbjct: 396 HWYTGEGMDEMEFTEAESNMNDLV 419
>At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 172 bits (418), Expect = 3e-43
Identities = 76/84 (90%), Positives = 82/84 (97%)
Frame = +1
Query: 1 KNSSYFVEWIPNNVKTAVCDIPPRGLKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFL 180
KNSSYFVEWIPNNVK+ VCDIPP GLKMA+TFIGNST+IQE+F+R+SEQFTAMFRRKAFL
Sbjct: 336 KNSSYFVEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFL 395
Query: 181 HWYTGEGMDEMEFTEAESNMNDLV 252
HWYTGEGMDEMEFTEAESNMNDLV
Sbjct: 396 HWYTGEGMDEMEFTEAESNMNDLV 419
>At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8)
identical to SP|P29516 Tubulin beta-8 chain {Arabidopsis
thaliana}; supporting cDNA gi|15451225|gb|AY054693.1|
Length = 449
Score = 172 bits (418), Expect = 3e-43
Identities = 76/84 (90%), Positives = 82/84 (97%)
Frame = +1
Query: 1 KNSSYFVEWIPNNVKTAVCDIPPRGLKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFL 180
KNSSYFVEWIPNNVK+ VCDIPP GLKMA+TFIGNST+IQE+F+R+SEQFTAMFRRKAFL
Sbjct: 336 KNSSYFVEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFL 395
Query: 181 HWYTGEGMDEMEFTEAESNMNDLV 252
HWYTGEGMDEMEFTEAESNMNDLV
Sbjct: 396 HWYTGEGMDEMEFTEAESNMNDLV 419
>At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical to
GB:M84704 SP|P29515 Tubulin beta-7 chain {Arabidopsis
thaliana}
Length = 449
Score = 172 bits (418), Expect = 3e-43
Identities = 76/84 (90%), Positives = 82/84 (97%)
Frame = +1
Query: 1 KNSSYFVEWIPNNVKTAVCDIPPRGLKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFL 180
KNSSYFVEWIPNNVK+ VCDIPP GLKMA+TFIGNST+IQE+F+R+SEQFTAMFRRKAFL
Sbjct: 336 KNSSYFVEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFL 395
Query: 181 HWYTGEGMDEMEFTEAESNMNDLV 252
HWYTGEGMDEMEFTEAESNMNDLV
Sbjct: 396 HWYTGEGMDEMEFTEAESNMNDLV 419
>At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly
identical to SP|P12411 Tubulin beta-1 chain {Arabidopsis
thaliana}
Length = 447
Score = 171 bits (416), Expect = 5e-43
Identities = 74/84 (88%), Positives = 83/84 (98%)
Frame = +1
Query: 1 KNSSYFVEWIPNNVKTAVCDIPPRGLKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFL 180
KNSSYFVEWIPNNVK++VCDIPP G+KMA+TF+GNST+IQE+F+R+SEQFTAMFRRKAFL
Sbjct: 337 KNSSYFVEWIPNNVKSSVCDIPPTGIKMASTFVGNSTSIQEMFRRVSEQFTAMFRRKAFL 396
Query: 181 HWYTGEGMDEMEFTEAESNMNDLV 252
HWYTGEGMDEMEFTEAESNMNDLV
Sbjct: 397 HWYTGEGMDEMEFTEAESNMNDLV 420
>At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly
identical to SP|P24636 Tubulin beta-4 chain {Arabidopsis
thaliana}
Length = 444
Score = 170 bits (414), Expect = 9e-43
Identities = 75/84 (89%), Positives = 83/84 (98%)
Frame = +1
Query: 1 KNSSYFVEWIPNNVKTAVCDIPPRGLKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFL 180
KNSSYFVEWIPNNVK++VCDI P+GLKMA+TFIGNST+IQE+F+R+SEQFTAMFRRKAFL
Sbjct: 336 KNSSYFVEWIPNNVKSSVCDIAPKGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFL 395
Query: 181 HWYTGEGMDEMEFTEAESNMNDLV 252
HWYTGEGMDEMEFTEAESNMNDLV
Sbjct: 396 HWYTGEGMDEMEFTEAESNMNDLV 419
>At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly
identical to SP|P29514 Tubulin beta-6 chain {Arabidopsis
thaliana}
Length = 449
Score = 169 bits (412), Expect = 1e-42
Identities = 75/84 (89%), Positives = 82/84 (97%)
Frame = +1
Query: 1 KNSSYFVEWIPNNVKTAVCDIPPRGLKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFL 180
KNSSYFVEWIPNNVK++VCDI PRGL MA+TFIGNST+IQE+F+R+SEQFTAMFRRKAFL
Sbjct: 336 KNSSYFVEWIPNNVKSSVCDIAPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFL 395
Query: 181 HWYTGEGMDEMEFTEAESNMNDLV 252
HWYTGEGMDEMEFTEAESNMNDLV
Sbjct: 396 HWYTGEGMDEMEFTEAESNMNDLV 419
>At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly
identical to SP|P29517 Tubulin beta-9 chain {Arabidopsis
thaliana}
Length = 444
Score = 169 bits (411), Expect = 2e-42
Identities = 75/84 (89%), Positives = 82/84 (97%)
Frame = +1
Query: 1 KNSSYFVEWIPNNVKTAVCDIPPRGLKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFL 180
KNSSYFVEWIPNNVK++VCDI P GLKMA+TFIGNST+IQE+F+R+SEQFTAMFRRKAFL
Sbjct: 336 KNSSYFVEWIPNNVKSSVCDIAPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFL 395
Query: 181 HWYTGEGMDEMEFTEAESNMNDLV 252
HWYTGEGMDEMEFTEAESNMNDLV
Sbjct: 396 HWYTGEGMDEMEFTEAESNMNDLV 419
>At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 70.5 bits (165), Expect = 1e-12
Identities = 33/88 (37%), Positives = 50/88 (56%), Gaps = 8/88 (9%)
Frame = +1
Query: 1 KNSSYFVEWIPNNVKTAVCDIPPR--------GLKMAATFIGNSTAIQELFKRISEQFTA 156
K + FV+W P K + PP ++ A I N+TA+ E+F RI +F
Sbjct: 338 KRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDL 397
Query: 157 MFRRKAFLHWYTGEGMDEMEFTEAESNM 240
M+ ++AF+HWY GEGM+E EF+EA ++
Sbjct: 398 MYAKRAFVHWYVGEGMEEGEFSEAREDL 425
>At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 70.5 bits (165), Expect = 1e-12
Identities = 33/88 (37%), Positives = 50/88 (56%), Gaps = 8/88 (9%)
Frame = +1
Query: 1 KNSSYFVEWIPNNVKTAVCDIPPR--------GLKMAATFIGNSTAIQELFKRISEQFTA 156
K + FV+W P K + PP ++ A I N+TA+ E+F RI +F
Sbjct: 338 KRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDL 397
Query: 157 MFRRKAFLHWYTGEGMDEMEFTEAESNM 240
M+ ++AF+HWY GEGM+E EF+EA ++
Sbjct: 398 MYAKRAFVHWYVGEGMEEGEFSEAREDL 425
>At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 450
Score = 70.5 bits (165), Expect = 1e-12
Identities = 33/88 (37%), Positives = 50/88 (56%), Gaps = 8/88 (9%)
Frame = +1
Query: 1 KNSSYFVEWIPNNVKTAVCDIPPR--------GLKMAATFIGNSTAIQELFKRISEQFTA 156
K + FV+W P K + PP ++ A I NST++ E+F RI +F
Sbjct: 338 KRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDL 397
Query: 157 MFRRKAFLHWYTGEGMDEMEFTEAESNM 240
M+ ++AF+HWY GEGM+E EF+EA ++
Sbjct: 398 MYAKRAFVHWYVGEGMEEGEFSEAREDL 425
>At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly
identical to SP|P11139 Tubulin alpha-1 chain
{Arabidopsis thaliana}
Length = 450
Score = 70.5 bits (165), Expect = 1e-12
Identities = 33/88 (37%), Positives = 50/88 (56%), Gaps = 8/88 (9%)
Frame = +1
Query: 1 KNSSYFVEWIPNNVKTAVCDIPPR--------GLKMAATFIGNSTAIQELFKRISEQFTA 156
K + FV+W P K + PP ++ A I N+TA+ E+F RI +F
Sbjct: 338 KRTIQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDL 397
Query: 157 MFRRKAFLHWYTGEGMDEMEFTEAESNM 240
M+ ++AF+HWY GEGM+E EF+EA ++
Sbjct: 398 MYSKRAFVHWYVGEGMEEGEFSEAREDL 425
>At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2)
identical to tubulin alpha-2/alpha-4 chain SP|P29510
GB:P29510 from [Arabidopsis thaliana]
Length = 450
Score = 70.5 bits (165), Expect = 1e-12
Identities = 33/88 (37%), Positives = 50/88 (56%), Gaps = 8/88 (9%)
Frame = +1
Query: 1 KNSSYFVEWIPNNVKTAVCDIPPR--------GLKMAATFIGNSTAIQELFKRISEQFTA 156
K + FV+W P K + PP ++ A I NST++ E+F RI +F
Sbjct: 338 KRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDL 397
Query: 157 MFRRKAFLHWYTGEGMDEMEFTEAESNM 240
M+ ++AF+HWY GEGM+E EF+EA ++
Sbjct: 398 MYAKRAFVHWYVGEGMEEGEFSEAREDL 425
>At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4)
nearly identical to SP:P29510 Tubulin alpha-2/alpha-4
chain from [Arabidopsis thaliana]
Length = 450
Score = 70.5 bits (165), Expect = 1e-12
Identities = 33/88 (37%), Positives = 50/88 (56%), Gaps = 8/88 (9%)
Frame = +1
Query: 1 KNSSYFVEWIPNNVKTAVCDIPPR--------GLKMAATFIGNSTAIQELFKRISEQFTA 156
K + FV+W P K + PP ++ A I NST++ E+F RI +F
Sbjct: 338 KRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDL 397
Query: 157 MFRRKAFLHWYTGEGMDEMEFTEAESNM 240
M+ ++AF+HWY GEGM+E EF+EA ++
Sbjct: 398 MYAKRAFVHWYVGEGMEEGEFSEAREDL 425
>At4g15460.1 68417.m02363 glycine-rich protein
Length = 148
Score = 29.1 bits (62), Expect = 3.8
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -2
Query: 114 GGGVSNEGGGHLETTRGNVAHGGLHVV 34
GGG ++ GGGH G+ + GG H V
Sbjct: 61 GGGHASGGGGHASVGGGHASGGGGHAV 87
Score = 28.3 bits (60), Expect = 6.7
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = -2
Query: 114 GGGVSNEGGGHLETTRGNVAHGGLHVVGDPFHEV*G 7
GG ++ GGGH G+ + GG H G H V G
Sbjct: 54 GGAHASVGGGHASGGGGHASVGGGHASGGGGHAVEG 89
Score = 28.3 bits (60), Expect = 6.7
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -2
Query: 114 GGGVSNEGGGHLETTRGNVAHGGLHVVG 31
GGG ++ GGGH G+ GG H G
Sbjct: 68 GGGHASVGGGHASGGGGHAVEGGGHAGG 95
>At3g19700.1 68416.m02495 leucine-rich repeat transmembrane protein
kinase, putative similar to leucine-rich receptor-like
protein kinase GB:AAC36318 from [Malus domestica];
contains leucine rich repeat (LRR) domains,
Pfam:PF00560; contains protein kinase domain,
Pfam:PF00069
Length = 991
Score = 28.3 bits (60), Expect = 6.7
Identities = 16/39 (41%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Frame = -2
Query: 165 PEHSGELFRDALEQLLDGGGVSNEGGGHLE-TTRGNVAH 52
PE S E FR + L DG SN G E T N+ H
Sbjct: 704 PESSHESFRSSTAMLSDGNNRSNNGEFEAEVATLSNIKH 742
>At2g24340.1 68415.m02909 hypothetical protein
Length = 322
Score = 28.3 bits (60), Expect = 6.7
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = +1
Query: 73 GLKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYT 192
GLK+ AT G T + E + + + +F+HW T
Sbjct: 186 GLKIGATTSGVKTKVDEDIEPLCRHYKCATMDSSFIHWIT 225
>At1g08370.1 68414.m00926 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965; contains some similarity to
transcription factor [Danio rerio]
gi|15617376|emb|CAC69871
Length = 367
Score = 27.9 bits (59), Expect = 8.8
Identities = 16/34 (47%), Positives = 18/34 (52%)
Frame = -2
Query: 324 FPAPAPRQTLRPRRRWPPGTVGTRDKVVHVALSL 223
FP P P +L P P G V +RDKV LSL
Sbjct: 317 FPPPTPPPSLAPA---PTGPVISRDKVKEALLSL 347
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,933,186
Number of Sequences: 28952
Number of extensions: 299599
Number of successful extensions: 915
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 907
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1931371200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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