Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10502
         (793 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14F5.05c |sam1||S-adenosylmethionine synthetase |Schizosacch...    30   0.44 
SPAC31G5.11 |pac2||cAMP-independent regulatory protein Pac2 |Sch...    26   7.1  
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    25   9.4  

>SPBC14F5.05c |sam1||S-adenosylmethionine synthetase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 382

 Score = 29.9 bits (64), Expect = 0.44
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +3

Query: 9   TSTYGHFGRAGFPWESPKPL 68
           T++YGHF     PWE PK L
Sbjct: 361 TASYGHFTDQSKPWEQPKEL 380


>SPAC31G5.11 |pac2||cAMP-independent regulatory protein Pac2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 235

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
 Frame = -2

Query: 225 VPLARF*SHYSLKRDTGDAAPSLQ*HTYISVYYILMEYLHCS-NAQVLQVILQSAAW 58
           V L+R    Y L  D G   P +Q   +++ Y IL+E + CS +A+VL   L+ A W
Sbjct: 181 VNLSRITIPYGLYPDAGP--PLVQAPKFLAPYDILVEKVACSEDARVLDK-LRQALW 234


>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -2

Query: 558 YIIKLITKNIRDCRQSITLKQNKRT 484
           Y++   TK+I D RQS   +QN+ T
Sbjct: 213 YVLFSSTKSIADIRQSYLARQNRLT 237


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,144,812
Number of Sequences: 5004
Number of extensions: 62595
Number of successful extensions: 100
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)